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Difference between revisions of "Projects"
From Open Bioinformatics Foundation
(Moved some minor user-added projects from 'Affiliated projects' to 'Other related projects') |
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==Other related projects== | ==Other related projects== | ||
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+ | * [http://biojs.net/ BioJS] - an open-source library of JavaScript components to visualise biological data | ||
* BioHaskell [http://biohaskell.org/ home page], [http://hackage.haskell.org/packages/archive/pkg-list.html#cat:bioinformatics releases] | * BioHaskell [http://biohaskell.org/ home page], [http://hackage.haskell.org/packages/archive/pkg-list.html#cat:bioinformatics releases] | ||
* [http://biocaml.org Biocaml] - bioinformatics library in the functional programming language OCaml | * [http://biocaml.org Biocaml] - bioinformatics library in the functional programming language OCaml | ||
* [http://biophp.org BioPHP] | * [http://biophp.org BioPHP] | ||
+ | * [http://biosmalltalk.github.io/web/ BioSmalltalk] - Bioinformatics in a pure objects environment | ||
* [http://bioweka.sourceforge.net/index.php/Main_Page BioWeka] | * [http://bioweka.sourceforge.net/index.php/Main_Page BioWeka] | ||
* [http://www.bioclipse.net/ BioClipse] - visual platform based on Eclipse | * [http://www.bioclipse.net/ BioClipse] - visual platform based on Eclipse |
Revision as of 12:44, 19 November 2015
Contents
Main projects
Affiliated projects
- Generic Genome Browser - part of GMOD
- Chado - The GMOD DB schema
- BioJS - an open-source library of JavaScript components to visualise biological data
- BioHaskell home page, releases
- Biocaml - bioinformatics library in the functional programming language OCaml
- BioPHP
- BioSmalltalk - Bioinformatics in a pure objects environment
- BioWeka
- BioClipse - visual platform based on Eclipse
- CGL - Comparative Genomics Library
- Wikiomics - Bioinformatics wiki
- Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
- OpenBQS - Bibliographic query system
- BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
- BioMake & Skam - Task management tool, similar to makefiles
Ontologies and Definitions
- Cyclone - provides an open source Java API to the pathway tool BioCyc.
- GO-Perl - parsers and object model for OBO ontologies
- Chaos-XML - File format based on the sequence modules of the Chado relational schema
- Sequence Ontology
- Gene Ontology
- Obol