User:Jason
From BioPerl
About
Dr. Jason Stajich completed his graduate work at Duke University and is a postdoctoral fellow at the University of California, Berkeley and the Miller Institute. He has been a BioPerl developer since 2000 and President of Open Bioinformatics Foundation since August 2005. Jason is the primary architect of the Bio::SearchIO, Bio::TreeIO, PopGen modules systems. He contributes to the Gbrowse system and helps coordinate aspects of releasing the different software packages. He worked on the defunct BioCORBA project as well as a first iteration of BioPerl db.
I am interested in evolution of fungi as revealed through comparisons of their genomes. In particular I work on comparisons of pathogenic fungi and deep branches in the fungal kingdom using molecular evolution tests for selection and comparisons of gene families. More details on the lab webpage.
- Bioperl talks and tutorials I've given
- Tutorials linked on the BioPerl site
- BOSC 2005 - my keynote at BOSC 2005
- BOSC 2002 - state of BioPerl at BOSC 2002
- Links to more tutorials (somewhat overlapping)
- My Perlcast interview
- Our Fungal Genomes Blog and Fungal Genome Wiki
- My personal blog, toying with Vox Blog, and Nodalpoint blogging.
Links
- O|B|F Wiki
- GMOD
- My fungal genome resources site at Duke.
- WormBase
- AAA site resources for the 12 drosophila genomes
- NESCent
- BioWiki - Ian Holmes's lab site
- Nodalpoint
- wikiomics
- TreeFam, Pandit
