- OBF Annual Meeting 2011
- The annual Board of Directors Meeting of the Open Bioinformatics Foundation will take place on November 8, 2011. As in previous years, it will be held by conference call, estimated to be about 2 hrs long. Continue reading →
- Chromosome Diagrams in Biopython
- One of the new things coming in Biopython 1.59 is improved chromosome diagrams, something you may have seen via Twitter. I’ve just been updating the Biopython Tutorial (current version here, PDF) to include an example drawing this: Here’s a PDF … Continue reading →
- BioRuby 1.4.2 released
- We are pleased to announce the release of BioRuby 1.4.2. This new release fixes bugs existed in 1.4.1 and adds new features and improvement of performance. Here is a brief summary of changes. Speed-up of Bio::RestrictionEnzyme::Analysis.cut: The new code is … Continue reading →
- Biopython 1.58 released
- Source distributions and Windows installers for Biopython 1.58 are available from the downloads page on the Biopython website and from the Python Package Index (PyPI). A new interface and parsers for the PAML (Phylogenetic Analysis by Maximum Likelihood) package of … Continue reading →
- Announcing OBF Google Summer of Code Accepted Students
- I’m very pleased and excited to announce that the Open Bioinformatics Foundation has selected 6 very capable students to work on OBF projects this summer as part of the Google Summer of Code program. The accepted students, their projects, and … Continue reading →
- BioPerl-DB, BioPerl-Run, BioPerl-Network 1.6.9 released
- The latest BioPerl-DB, BioPerl-Run, and BioPerl-Network code has been released to CPAN: BioPerl-Run BioPerl-DB BioPerl-Network Please report any bugs to our Redmine server. Enjoy! chris
- BioPerl 1.6.9 released
- BioPerl 1.6.9 is now available in CPAN.
- Biopython 1.57 released
- The Biopython community is pleased to announce the release of Biopython 1.57. Source distributions and Windows installers are available from the downloads page on the Biopython website and from the Python Package Index. Bio.SeqIO now includes an index_db() function which … Continue reading →
- OBF and Google Summer of Code 2011
- Google announced today the Open Bioinformatics Foundation (OBF) has been accepted as a mentoring organization for the 2011 Google Summer of Code! Continue reading →
- Introduction of OpenID logins for OBF wikis
- Due to a huge influx of spam across all OBF wikis, we are in the process of locking down new user account creation and adding OpenID logins for the OBF wikis (BioPerl example). User account creation via the old login … Continue reading →
|
- BioPerl-DB, BioPerl-Run, BioPerl-Network 1.6.9 released
- The latest BioPerl-DB, BioPerl-Run, and BioPerl-Network code has been released to CPAN: BioPerl-Run BioPerl-DB BioPerl-Network Please report any bugs to our Redmine server. Enjoy! chris
- BioPerl 1.6.9 released
- BioPerl 1.6.9 is now available in CPAN.
- OBF and Google Summer of Code 2011
- Google announced today the Open Bioinformatics Foundation (OBF) has been accepted as a mentoring organization for the 2011 Google Summer of Code! Continue reading →
- Introduction of OpenID logins for OBF wikis
- Due to a huge influx of spam across all OBF wikis, we are in the process of locking down new user account creation and adding OpenID logins for the OBF wikis (BioPerl example). User account creation via the old login … Continue reading →
- OBF Redmine server now available
- The OBF now has a sparkly new Redmine instance running on Amazon EC2,
- BioPerl has moved to GitHub
- BioPerl has migrated to git and
- O|B|F Google Summer of Code Accepted Students
- I’m pleased to announce the acceptance of OBF’s 2010 Google Summer of Code students, listed in alphabetical order with their project titles and primary mentors: Mark Chapman (PM Andreas Prlic) – Improvements to BioJava including Implementation of Multiple Sequence Alignment … Continue reading →
- O|B|F in Google Summer of Code
- O|B|F is in Google Summer of Code, student applications due to Google April 9, 2010. Continue reading →
- BioPerl at GMOD Meeting 2010
- BioPerl developers and users attended the BioPerl satellite meeting on January 13th, just
- Sanger FASTQ format and the Solexa/Illumina variants
- I’m delighted to announce an open access publication in Nucleic Acids Research describing the FASTQ file format based on the conventions agreed by the OBF projects: The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ … Continue reading →
|
