BioRuby 1.3.1 released

We are pleased to announce the release of BioRuby 1.3.1. This new release fixes many bugs existed in 1.3.0.

Here is a brief summary of changes.

  • Refactoring of BioSQL support.
  • Bio::PubMed bug fixes.
  • Bio::NCBI::REST bug fixes.
  • Bio::GCG::Msf bug fixes.
  • Bio::Fasta::Report bug fixes and added support for multiple query sequences.
  • Bio::Sim4::Report bug fixes.
  • Added unit tests for Bio::GCG::Msf and Bio::Sim4::Report.
  • License of BioRuby is clarified.

In addition, many changes have been made, mainly bug fixes. For more information, you can see ChangeLog.

The archive is available at:

We also put RubyGems pacakge at RubyForge as always. You can easily install by using RubyGems.
% sudo gem install bio

You can also obtain bioruby gem file from

Hope you enjoy.