| Thursday July 29th | Friday July 30th | ||
| 09:00:00 am | Keynote: Wolfgang Huber: Bioconductor Project |
Martin Senger: slides Life Sciences Identifiers. Finally? |
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| 09:30:00 am | Peter Rice: slides EMBOSS |
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| 10:00:00 am | Chris Mungall: slides BioMake |
Peter van Heusden: slides Software Validation |
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| 10:30:00 am | Coffee Arek Kasprzyk: BioMart |
Coffee: Annotation Database Presentations: |
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| Lincoln Stein: slides GMOD |
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| 11:00:00 am | Toshiaki Katayama: slides BioRuby + KEGG API + KEGG DAS |
Ewan Birney: Ensembl |
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| Steve Fischer: GUS |
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| 11:30:00 am | Levinson, Gene (NIH/NCI): slides caBIOperl |
James Gilbert: slides The Otter Annotation System |
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| 12:00:00 pm | Lunch | Lunch | |
| 01:00:00 pm | Lincoln Stein: slides Semantic MOBY |
Michel Dumontier: slides NCBI C++ Toolkit |
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| Thomas Down: BioJava |
Henning Hermjakob: slides The PSI MI standard |
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| 02:00:00 pm | Lightning talks and Demos |
Lightning talks | |
| Darin London: MartShell – A Commandline, Interactive Shell interface to BioMart |
Lawrence Lau: Open Source Software Funding Mechanisms: Promises and Pitfalls |
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| Frank Gibbons: slides BioGraphNet, A Distributed Forum for Heterogeneous Biological Networks |
Craig Melsopp: slides Ensj Library |
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| Matthew Pocock: slides BioJava Version 2 |
Rob Clack: slides ZMap: Annotaing Genomic Data from Various Sources |
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| Brook G. Milligan: Multiplatform Scientific Computing Environment |
Kazuharu Arakawa: slides G-language Genome Analysis Environment |
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| Chad Matsalla: slides Model Centric Architecture |
Siu-wai Leung: slides Bio# (Bio-Sharp) |
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| Michael Watson: slides Systems Biology Integration |
Bob Freeman: Magic Tools: A Suite of Programs to Aid in Gene Discovery and Expression Analysis via EST/Genome Sequencing and Microarray Analysis |
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| 03:00:00 pm | Coffee: Lightning talks and Demos |
Coffee: Lightning talks and Demos |
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| Matthew Pocock: slides Taverna: Workflow Enactor for Bioinformatics |
Brian O'Connor: Turnkey, A Generic Data Visualization Tool |
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| Rasmus Fogh: Data Modeling, Automatic Code Generation, and a Data Standard for Structural Biology |
Hidemasa Bono: slides SayaMatcher |
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| Francois Pepin: slides BIAS: Bioinformatics Integrated Application Software |
Karsten Hokamp: ArrayPipe and ProbeLynx - Joining Forces for Improved Microarray Analysis |
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| Jennifer Gardy: slides PSORT-B: An open-source meta-analysis tool for protein localization prediction. |
Chris Zmasek: Development of an XML for Describing annotated Phylogenetic Trees |
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| Chris Mungall: slides BioStag: A SQL Template Resource for Bioinformatics Databases |
Mark Poolman: Metabolic Modelling of 'Omic-Scale Systems |
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| Marc Dumontier: Biomolecular Interaction Network Database (BIND) |
Michael Hoffman: slides Poly: rapid development of embarrassingly parallelizable applications |
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| 04:00:00 pm | Mark Hoebeke: slides Exploring genomes and analysis results with MuGeN |
Richard Smith: slides InterMine: generic object integration and warehousing |
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| Angela Baldo: slides Using the SEAN package to predict SNPs in tomatoes |
Subrata Bose: Use of AI for Bioinformatics knowledge discovery |
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| Ian Donaldson: slides SeqHound: a bioinformatics programming platform |
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| 05:00:00 pm | BOFs | BOFs | |
| BOFs | BOFs |