Biopython paper published

 Posted on March 22, 2009  |  iddo

An Application Note describing Biopython has recently been accepted for publication in the Oxford Journal Bioinformatics. An advance copy of the Open Access article is available online:

P.J.A. Cock, T. Antao, J.T. Chang, B.A. Chapman, C.J. Cox, A. Dalke, I. Friedberg, T. Hamelryck, F. Kauff, B. Wilczynski and M.J.L. de Hoon (2009) Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics, doi:10.1093/bioinformatics/btp163

Biopython and version control systems

 Posted on March 17, 2009  |  peterc

Initially for evaluation purposes only, Giovanni and Bartek have setup a mirror of Biopython on GitHub, which is automatically updated from the OBF hosted Biopython CVS repository. See our git migration wiki page for details. If this is favorably received, then moving Biopython from CVS to git seems likely at some point this year. Originally, all the OBF hosted projects used CVS for their source code repositories. At the start of 2008, BioPerl and BioJava moved over to Subversion (SVN), followed by BioSQL. [Read More]

BOSC 2009 Call for Abstracts

 Posted on February 24, 2009  |  kdahlquist

Please forward as appropriate and forgive multiple postings. Call for Abstracts for the 2009 Bioinformatics Open Source Conference (BOSC) 2009 An ISMB 2009 Special Interest Group (SIG) Date: June 27-28, 2009 Location: Stockholm, Sweden URL: /wiki/BOSC_2009 Abstract submission via EasyChair: https://www.easychair.org/login.cgi?conf=bosc2009 Important Dates Monday, April 13: Abstract deadline May 1, 2009: Notification of accepted abstracts May 15, 2009: Early Registration Discount Cut-off date June 27-28, 2009: BOSC 2009 The Bioinformatics Open Source Conference (BOSC) is sponsored by the Open Bioinformatics Foundation (O|B|F), a non-profit group dedicated to promoting the practice and philosophy of Open Source software development within the biological research community. [Read More]

Google Summer of Code: Call for Bio* Volunteers

 Posted on February 13, 2009  |  hilmar

Google is committed to run the Summer of Code program again this year. It will be for the 5th time. In broad strokes, the program funds what you might call remote summer internships for students to contribute to an open-source software project. Projects (or umbrella organizations) wishing to participate in the program apply during the organization application period (March 9-13 in 2009). Those accepted into the program provide project ideas and supply mentors that guide the work on those. [Read More]

OBF Conference Call Board Meeting

 Posted on November 18, 2008  |  stajich

The OBF Conference call is scheduled for 12:30PM to 2PM PST on Wednesday Nov 19, 2008. Members of the Open Bioinformatics Foundation and those interested in the decisions are invited to listen in and participate. A brief agenda is available here. Please email Hilmar Lapp at hlapp _AT_ gmx.net for call in number and codes if you wish to participate or listen to the discussion. Those official members should have gotten an email via the OBF members email list. [Read More]

RSS feeds

 Posted on April 28, 2006  |  stajich

I’ve added a page about RSS feeds in BioPerl. These include links to CVS commits as a RSS feed. This a bit of a hack using cvs2rss and cvs2cl and I have hardcoded it to show the last 30 commits only. In addition RSS news is now embedded on the main BioPerl and Tracking CVS commits webpages to make for better interlinking between the news and wiki site ( you might even be reading this there). [Read More]