Google-Summer-of-Code

This is a guest post from Mihai Popescu, a GSoC student with CWL, which participates under the OBF umbrella. Cross-posted on the CWL forums: https://cwl.discourse.group/t/working-on-a-cwl-toil-project-with-the-open-bioinformatics-foundation/390 I am Mihai Popescu, a second year master student at VU Amsterdam in Parallel and Distributed Computer Systems. I am happy that my GSoC proposal got accepted and that I have started working on the project. I attended some CWL meetings since I submitted the proposal and I got to know a small part of the community. [Read More]

This post is guest-posted by Federica Trevisan, an OBF GSoC student with the Wellcome Trust. Cross-posted with Federica’s blog: https://federikovi.medium.com/my-google-summer-of-code-2021-c795dd0cc794 My Google Summer of Code 2021 Well yes, I am part of GSoC 2021 💻☀️ What is Google Summer of Code In a nutshell, GSoC is a remote program founded in 2005, in which Google connects students and organisations during the summer break from classes. In this global program the students work with an open source organization on a 10 week programming project during their break from school. [Read More]

OBF students and mentors at an OBF kickoff call Every year the OBF applies to participate as a mentoring organisation for Google Summer of Code, a paid work experience program where students get the chance to do paid work on an open source project and open source organisations host the students to work on their projects. This year, eight projects have participated under the OBF umbrella - read more about these fantastic students and their work below: [Read More]

It’s Google Summer of Code (GSoC) application time again - I’ll be leading the OBF GSoC application and org admin process this year alongside Sarthak Sehgal, Michael Crusoe, and Kai Blin. The OBF typically works as an umbrella organisation for other sub-projects - if you have an open + bio related code project that you think could use a student intern this year, please read on. TL;DR: Please send ideas for half-sized projects (1. [Read More]

OBF was accepted as a mentoring organisation for Google Summer of Code this year. It was another good year for OBF, with Kai Blin, Michael R. Crusoe, Sarthak Sehgal, and Yo Yehudi as administrators. We hosted eight students all of which successfully completed their work: Srijan Verma (mentors: Dmitry Petrov, Dymitr Nowicki, Vlada Tyshchenko, Anton Kulaga) - Healthcare-Researcher-Connector (HRC): A Federated Learning package for bridging the gap between Healthcare providers and researchers Himanshi Mathur (mentors: Jun Aruga, Evan Nemerson, Michael R. [Read More]

OBF has been selected as a Google Summer of Code mentor organisation for the 5th consecutive time! We are proud to be hosting over 13 projects from various sub-organisations that aim to promote open science. This year OBF’s application was led by Sarthak Sehgal, Kai Blin, Yo Yehudi, and Michael Crusoe. Last year, GSoC 2019, was another good year with five students successfully completing their projects. Call to students to apply for GSoC OBF is welcoming students across the globe with a passion for open science to apply for GSoC. [Read More]

We have recently applied to Google for the OBF to be part of the Google Summer of Code 2019 programme, again with Kai Blin and Michael Crusoe as joint administrators. Last year, OBF GSoC 2018, was another good year with five students successfully completing their projects: Synchon Mandal (mentor Moritz Beber) “Adding methods to cobrapy for improved constraint-based metabolic modelling.” ( first blog bost; final report) Sophia Mersmann (mentors Oliver Alka, Julianus Pfeuffer, and Timo Sachsenberg) “Improve Posterior Error Probability Estimation For Peptide Search Engine Results” (blog posts; final report) Edgar Garriga Nogales (mentors Paolo Di Tommaso, Michael R. [Read More]

The Open Bioinformatics Foundation is again participating in the Google Summer of Code program this year. Last Monday the selected students were announced. Congratulations to all of you, and a heartfelt welcome. I also want to use this opportunity to thank all students who applied. Resources were limited, we did not get all the slots that we asked for, and so we had to make some tough choices. We wish you all the best for your future endeavours, and hope to be able to work with you in future. [Read More]

The Open Bioinformatics Foundation has been accepted as a mentoring organisation for the 2018 instance of the Google Summer of Code. OBF is acting as an umbrella for ten bioinformatics Open Source projects, making it possible to offer a very diverse set of student projects. Are you a student and interested in applying for any of the projects? The student application period is open from March 12th through 27th from the official GSoC website. [Read More]

This is a guest blog post from Anton Khodak, who was supported by the ongoing Open Bioinformatics Foundation travel fellowship program to attend a week long Common Workflow Language (CWL) workshop in London, November 2016. This was a natural continuation of Anton’s work on porting tools to the CWL as one of the OBF’s Google Summer of Code 2016 students. The OBF’s Travel Fellowship program continues to help open source bioinformatics software developers with funding to attend conferences or workshops. The current call closes 15 April 2017 - if you’re planning to attend the OBF’s annual Bioinformatics Open Source Conference (BOSC) 2017 in Prague, you might want to apply? [Read More]