We are glad to announce that the call for applications for the OBF Event Fellowship is now open. The deadline for this round is 1 October 2020. Applications should be submitted via this Google Form.

Renaming from “OBF Travel Fellowship” to “OBF Event Fellowship”

One of the goals of the OBF fellowship is to increase the participation of members from traditionally underrepresented groups at events or communities that promote Open Source software development and/or open science practices in the biological sciences. Since so many scientific meetings have been or are now run online, and we wish to explicitly support remote participation for this year, we are renaming ‘OBF Travel Fellowship’ to ‘OBF Event Fellowship’.

The Open Bioinformatics Foundation (OBF) Event Fellowship program aims to promote diverse participation at events promoting open source bioinformatics software development and open science practices in the biological research community. Gigi Kenneth, a biochemistry undergrad and a bioinformatics enthusiast from Nigeria, was supported to participate in Bioinformatics Community Conference 2020 by this fellowship granted to her in the application round-1 of 2020. Find more information here.

I’m a biochemistry undergraduate, in my final year from the University of Port Harcourt, Nigeria. I started learning about artificial intelligence and machine learning last year (2019), which I found really interesting and was really amazed by its applications in various fields. I found myself wondering about how these related to my graduate program, so I did some digging and was awed by the incredible work being done in this field.

The Open Bioinformatics Foundation (OBF) Event Fellowship program aims to promote diverse participation at events promoting open source bioinformatics software development and open science practices in the biological research community. Edidiong Etuk (Eddie), an open-source lover and a software engineer from Nigeria, was supported to take part in Bioinformatics Open Source Conference 2020 by this fellowship granted to him in the application round-1 of 2020. Find more information here.

TL;DR This post is about my experience at Bioinformatics Community Conference 2020.

BCC2020 (the collaborative BOSC + GCC meeting) was held online, with over 800 people registered for some part of the meeting. We used Remo.co as the technology platform, along with Discord for chat. Read about why we chose those, how it worked out, and our tips for others who are organizing virtual conferences here.

“Table view” in Remo during BCC2020

After much discussion, the BCC2020 organizing committee has decided to hold the meeting on Remo.co, which is similar to Zoom but offers a more conference-like experience, with “floors” and “tables” where you can mingle with other attendees. It has great small group and presentation support, including for posters and demos. It’s also more fun than most online conference platforms.

Because Remo is not familiar to most BCC participants, we are holding two open houses, one in each hemisphere, the day before BCC training starts. These walk-throughs will introduce participants to Remo’s features and demonstrate how to navigate between sessions, poster/demos, BoFs, training and everything else.

Biopython 1.77 has been released and is available from our website and PyPI.

This is the first release since we dropped support for Python 2.7 and 3.5. Focusing on Python 3.6 or later will let us take advantage of new functionality and syntax, and simplify our code base and testing.

This release of Biopython supports Python 3.6, 3.7 and 3.8 It has also been tested on PyPy3.6.1 v7.1.1.

pairwise2 now allows the input of parameters with keywords and returns the alignments as a list of namedtuples.

We’re old hands at organizing in-person BOSC s (some of us were involved in planning the very first BOSC, in 2000), but this is the first time we’re attempting an online conference, and we want your help to make BCC2020 a rewarding experience for all.

We know many of you have attended other virtual conferences recently, and we’re interested in hearing what worked well and what didn’t. In particular, we are trying to figure out how to make virtual posters work, and how to run Q&A (with audio, or just typed? live, right after the talks, or asynchronous?). We’re also interested in ideas for adding fun social elements to what could otherwise be a pretty dull extended videoconference.

on behalf of the OBF Board members

We are delighted to announce that four awardees have been selected to receive the OBF travel fellowship for 2020 round 1, to support their participation in virtual events.

The OBF travel fellowship is now offered 2 times a year to multiple awardees towards supporting their participation in scientific workshops, conference and training events. The selection of individuals is made based on their applications, which state how their participation in the chosen event helps them promote open science practices in bioinformatics and/or enhance representation of minority groups in their communities.

We look forward to receiving lots of abstracts by the end of this week from people interested in presenting at the online Bioinformatics Community Conference (BCC2020), which combines the Galaxy Community Conference, and our own Bioinformatics Open Source Conference (BOSC). The BCC2020 abstract submission deadline is Friday 8 May 2020.

Some of the recent round of the OBF Travel Fellowships will be supporting BCC2020 attendees with video conferencing costs (headsets, web-cameras, etc), full announcement coming soon.

The Open Bioinformatics Foundation (OBF) sponsors a Travel Fellowship program aimed at increasing diverse participation at events promoting Open Source bioinformatics software development and open science in the biological research community. Michael Thompson’s participation at the Galaxy Admin Training 2020 workshop in Barcelona was supported by this fellowship. Find more information here.

I had the opportunity to visit the Barcelona Supercomputing Center (B.S.C) in Spain from 2nd - 6th March 2020 to participate in the Galaxy Admin Training 2020, organized by Galaxy Europe and in partnership with B.S.C, Elixir, and de.NBI.