Bosc

We recognize that the high price of travel and registration can make it hard for some people to attend BOSC/ISMB. Below are some ways to apply for financial assistance to present your work at BOSC 2025.

We are pleased to announce that BOSC and the newly-renamed Bio-Ontologies and Knowledge Representation (BOKR) will join forces for a day at ISMB/ECCB 2025! The joint session will include talks chosen from abstracts submitted to BOSC or BOKR, plus a keynote speaker who is well known in both the ontology and open science communities (stay tuned for an announcement soon!).

CollaborationFest 2025 will be a two-day collaborative work event at which participants work together to contribute code, documentation, training materials, and challenging analysis problems and use cases. Bring your own project ideas or come ready to collaborate with others on their projects!

BOSC has held CollaborationFests (aka CoFests) every year before or after ISMB since 2010. This year, we decided to hold the CollaborationFest as part of ISMB/ECCB and open it to all registered ISMB/ECCB participants. It will take place during the last two days of ISMB/ECCB.

We invited our community to nominate potential keynote speakers for BOSC, and we were delighted with the many excellent suggestions received. In the next stage of this process, we’re providing you with an opportunity to express any concerns regarding the suitability of any nominated individuals as BOSC Keynote Speakers.

Our invited speaker selection process and criteria include examples of potential reasons for exclusion. If you have concerns about any of the individuals on our list, please share them (with as much detail as you feel comfortable providing) through this anonymous form by Friday, January 24, 2025.

We invite you to join us for BOSC 2025, a vibrant gathering at the forefront of open-source bioinformatics and open science!

• Location: Liverpool, UK, and virtual
• Dates: July 21-22, 2025
• Website: /events/bosc/
• LinkedIn: https://www.linkedin.com/groups/14344023/
• Bluesky: https://bsky.app/profile/bosc.bsky.social
• Slack: https://join.slack.com/t/obf-bosc/shared_invite/zt-n5ur1gsj-z2C~69_4lYTFPg5tbWA8Ew

Key Dates

• January 16, 2025: Deadline for community nominations of keynote speakers
• April 17: Deadline for submitting talk/poster abstracts
• May 13: Talk/poster acceptance notifications
• May 15: Late poster submission deadline
• July 20-24: ISMB/ECCB 2025
• July 21-22: BOSC 2025 (the first two full days of ISMB/ECCB 2025)
• July 23-24: ISMB CollaborationFest

About BOSC

Abstract submission for BOSC 2024 is now open! Since some people can’t get conference travel approval from their institution until they get confirmation that their abstract has been accepted for a presentation, we started offering Early Poster Acceptance last year, and we are continuing the experiment this year. If you submit your abstract by March 21, 2024, we will notify you by March 29 whether it has been accepted or not for (at least) a poster.

We asked our community to nominate potential BOSC keynote speakers, and we were pleased with the great suggestions! In the next phase of our process, we’re giving you a chance to let us know if there is anything that makes any of the nominated individuals NOT appropriate as BOSC keynote speakers.

Our invited speaker process and rubric gives examples of some possible reasons for exclusion. If you have concerns about any of the people on our list, please let us know (with as much specificity as you feel comfortable providing) via this anonymous form no later than Thursday 2024-01-25.

We are seeking a diverse list of potential BOSC keynote speakers. We invite you, our community, to nominate people you think would be appropriate (and at least somewhat likely to accept the invitation – for example, it is extremely unlikely that we would get a ‘yes’ from a recent Nobel Laureate). Please submit your nominations here (as many as you like; you can fill out the form more than once to submit additional suggestions) by the end of the day on Wednesday 2024-01-17.

Dear Biopythoneers,

Our first release of 2024 is now out, sooner than planned as this is purely to revert the removal of the .strand, .ref, and .ref_db attributes of the SeqFeature which was done in Biopython 1.82 without a deprecation period. They are again aliases for .location.strand etc, but now trigger deprecation warnings. See our deprecation policy. We apologize for any inconvenience, and thank you to those reporting this.

This release of Biopython supports Python 3.8, 3.9, 3.10, 3.11 and 3.12. It has also been tested on PyPy3.9 v7.3.13. Python 3.8 is approaching end of life, our support for it is now deprecated.

CollaborationFest, CoFest for short, is a collaborative work event that has been held each of the past 13 years as a satellite event of BOSC. At these free events, held right before or after BOSC, participants  gather in small groups to exchange ideas and work together on projects including but not limited to hacking. Participants were encouraged to submit their project ideas in advance to facilitate collaboration.

CoFest 2023 took place during the two days just before BOSC, which was part of ISMB/ECCB 2023 in Lyon and online. It was the first in-person edition after several online-only CoFests, due to Covid pandemics. It was hosted by Jérémy Just at the nearby École Normale Supérieure de Lyon, which provided space and infrastructure, with funding from Complex Systems Institute for lunches and coffee breaks. Free virtual machines were made available by the French Institute for Bioinformatics and the Pôle scientifique de modélisation numérique.