Bosc

We are pleased to announce that BOSC and the newly-renamed Bio-Ontologies and Knowledge Representation (BOKR) will join forces for a day at ISMB/ECCB 2025! The joint session will include talks chosen from abstracts submitted to BOSC or Bio-Ontologies, plus a keynote speaker who is well known in both the ontology and open science communities (stay tuned for an announcement soon!). BOSC and BOKR are two of the longest-running COSIs (Communities of Special Interest) at ISMB: BOSC started in 2000 and BOKR (then called Bio-Ontologies) in 1998. [Read More]

CollaborationFest 2025 will be a two-day collaborative work event at which participants work together to contribute code, documentation, training materials, and challenging analysis problems and use cases. Bring your own project ideas or come ready to collaborate with others on their projects! BOSC has held CollaborationFests (aka CoFests) every year before or after ISMB since 2010. This year, we decided to hold the CollaborationFest as part of ISMB/ECCB and open it to all registered ISMB/ECCB participants. [Read More]

We invited our community to nominate potential keynote speakers for BOSC, and we were delighted with the many excellent suggestions received. In the next stage of this process, we’re providing you with an opportunity to express any concerns regarding the suitability of any nominated individuals as BOSC Keynote Speakers. Our invited speaker selection process and criteria include examples of potential reasons for exclusion. If you have concerns about any of the individuals on our list, please share them (with as much detail as you feel comfortable providing) through this anonymous form by Friday, January 24, 2025. [Read More]

We invite you to join us for BOSC 2025, a vibrant gathering at the forefront of open-source bioinformatics and open science! Location: Liverpool, UK, and virtual Dates: July 21-22, 2025 Website: /events/bosc/ LinkedIn: https://www.linkedin.com/groups/14344023/ Bluesky: https://bsky.app/profile/bosc.bsky.social Slack: https://join.slack.com/t/obf-bosc/shared_invite/zt-n5ur1gsj-z2C~69_4lYTFPg5tbWA8Ew Key Dates January 16, 2025: Deadline for community nominations of keynote speakers April 17: Deadline for submitting talk/poster abstracts May 13: Talk/poster acceptance notifications May 15: Late poster submission deadline July 20-24: ISMB/ECCB 2025 July 21-22: BOSC 2025 (the first two full days of ISMB/ECCB 2025) July 23-24: ISMB CollaborationFest About BOSC [Read More]

Abstract submission for BOSC 2024 is now open! Since some people can’t get conference travel approval from their institution until they get confirmation that their abstract has been accepted for a presentation, we started offering Early Poster Acceptance last year, and we are continuing the experiment this year. If you submit your abstract by March 21, 2024, we will notify you by March 29 whether it has been accepted or not for (at least) a poster. [Read More]

We asked our community to nominate potential BOSC keynote speakers, and we were pleased with the great suggestions! In the next phase of our process, we’re giving you a chance to let us know if there is anything that makes any of the nominated individuals NOT appropriate as BOSC keynote speakers. Our invited speaker process and rubric gives examples of some possible reasons for exclusion. If you have concerns about any of the people on our list, please let us know (with as much specificity as you feel comfortable providing) via this anonymous form no later than Thursday 2024-01-25. [Read More]

We are seeking a diverse list of potential BOSC keynote speakers. We invite you, our community, to nominate people you think would be appropriate (and at least somewhat likely to accept the invitation – for example, it is extremely unlikely that we would get a ‘yes’ from a recent Nobel Laureate). Please submit your nominations here (as many as you like; you can fill out the form more than once to submit additional suggestions) by the end of the day on Wednesday 2024-01-17. [Read More]

Dear Biopythoneers, Our first release of 2024 is now out, sooner than planned as this is purely to revert the removal of the .strand, .ref, and .ref_db attributes of the SeqFeature which was done in Biopython 1.82 without a deprecation period. They are again aliases for .location.strand etc, but now trigger deprecation warnings. See our deprecation policy. We apologize for any inconvenience, and thank you to those reporting this. This release of Biopython supports Python 3. [Read More]

CollaborationFest, CoFest for short, is a collaborative work event that has been held each of the past 13 years as a satellite event of BOSC. At these free events, held right before or after BOSC, participants gather in small groups to exchange ideas and work together on projects including but not limited to hacking. Participants were encouraged to submit their project ideas in advance to facilitate collaboration. CoFest 2023 took place during the two days just before BOSC, which was part of ISMB/ECCB 2023 in Lyon and online. [Read More]

Diversity, inclusion and accessibility (also known as Diversity, Equity and Inclusion, DEI) are a major part of BOSC’s mission and core values, and we pursue these goals in multiple ways. BOSC 2022, for example, included a panel on Building and Sustaining Inclusive Open Science Communities, with panelists who not only were experts on the topic but also themselves belong to various groups that are typically underrepresented in our community. And with generous support from our sponsors, each year we provide free registration to 10-20 BOSC participants as part of the OBF Event Fellowship program), which aims to increase diverse participation at events related to open source bioinformatics and open science. [Read More]