-

Difference between revisions of "BOSC 2010/Birds-of-a-Feather"

From Open Bioinformatics Foundation
Jump to: navigation, search
(Friday BOFs (Day 1))
Line 11: Line 11:
  
 
== Saturday BOFs (Day 2) ==
 
== Saturday BOFs (Day 2) ==
 +
 +
* Representing/Querying NGS Data in HBase/Hadoop -- a BOF to discuss how to represent, process, and query NGS data in HBase and/or HDFS/Hadoop. I'm interested in discussing ideas of how to represent information of interest to NGS researchers (specifically focused on variants, small indels, large indels, structural variation etc) in HBase tables.

Revision as of 16:44, 9 July 2010

If you would like to create a BOF, just sign up for a wiki account, login, and edit this page.

Friday BOFs (Day 1)

  • Dana Robinson - BioHDF, HDF5-based NGS data storage.
  • Biology in Python -- discussion on doing bioinformatics work with the fabulous Python programming language, using libraries like Biopython.

Saturday BOFs (Day 2)

  • Representing/Querying NGS Data in HBase/Hadoop -- a BOF to discuss how to represent, process, and query NGS data in HBase and/or HDFS/Hadoop. I'm interested in discussing ideas of how to represent information of interest to NGS researchers (specifically focused on variants, small indels, large indels, structural variation etc) in HBase tables.