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Difference between revisions of "BOSC 2017 Posters"

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Line 10: Line 10:
 
|-
 
|-
 
|1
 
|1
−
|Rishi Nag
+
|Monther Alhamdoosh
−
|Bio::DB::HTS - accessing HTSlib from Perl
+
|An ensemble approach for gene set testing analysis with reporting capabilities
 
|-
 
|-
 
|2
 
|2
−
|Ricardo Wurmus
+
|Wei Wang
−
|Reproducible and user-controlled software management in HPC with GNU Guix
+
|Aztec: Automated Biomedical Tool Index with Improved Information Retrieval System
 
|-
 
|-
 
|3
 
|3
−
|Rickard Hammarén
+
|Rishi Nag
−
|NGI-RNAseq - a best practice analysis pipeline in Nextflow
+
|Bio::DB::HTS ñ accessing HTSlib from Perl
 
|-
 
|-
 
|4
 
|4
−
|Daria Iakovishina
+
|John Fonner
−
|CueSea: quality control tool for Illumina genotyping microarray data, with correction on intensity, clusterization and biological specificity."
+
|BioContainers for supercomputers: 2,000+ accessible, discoverable Singularity apps"
 
|-
 
|-
 
|5
 
|5
−
|Monther Alhamdoosh
+
|Carole Goble
−
|An ensemble approach for gene set testing analysis with reporting capabilities
+
|Bioschemas for life science data
 
|-
 
|-
 
|6
 
|6
−
|thomas cokelaer
+
|Jiwen Xin
−
|Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis
+
|BioThings Explorer: Utilizing JSON-LD for Linking Biological APIs to Facilitate Knowledge Discovery
 
|-
 
|-
 
|7
 
|7
−
|Jiwen Xin
+
|Chunlei Wu
−
|BioThings Explorer: Utilizing JSON-LD for Linking Biological APIs to Facilitate Knowledge Discovery
+
|BioThings SDK: a toolkit for building high-performance data APIs in biology
 
|-
 
|-
 
|8
 
|8
−
|Luis Pedro Coelho
+
|Chunlei Wu
−
|NGLESS: Perfectly understandable and reproducible metagenomics pipelines using a domain-specific language
+
|BioThings SDK: a toolkit for building high-performance data APIs in biology
 
|-
 
|-
 
|9
 
|9
−
|Nivethika Mahasivam
+
|Mat˙ö Kalaö
−
|RADAR-CNS - Research Infrastructure for processing wearable data to improve health
+
|BioXSD | BioJSON | BioYAML - Towards unified formats for sequences, alignments, features, and annotations"
 
|-
 
|-
 
|10
 
|10
−
|Ngoc-Vinh Tran
+
|Felix Shaw
−
|PhyloProfile: an interactive and dynamic visualization tool for multi-layered phylogenetic profiles
+
|Collaborative Open Plant Omics: A platform for ìFAIRî data for plant science
 
|-
 
|-
 
|11
 
|11
−
|Kevin Sayers
+
|Daria Iakovishina
−
|Workflows interoperability with Nextflow and Common WL
+
|CueSea: quality control tool for Illumina genotyping microarray data, with correction on intensity, clusterization and biological specificity."
 
|-
 
|-
 
|12
 
|12
Line 58: Line 58:
 
|-
 
|-
 
|13
 
|13
−
|Kees van Bochove
+
|Farah Khan
−
|Gene Set Variation Analysis in cBioPortal
+
|CWL+Research Object == Complete Provenance
 
|-
 
|-
 
|14
 
|14
−
|Carole Goble
+
|Alberto Riva
−
|Bioschemas for life science data
+
|DAMON, an open source framework for reliable and reproducible analysis pipelines"
 
|-
 
|-
 
|15
 
|15
−
|Denis Yuen
+
|Tazro Ohta
−
|The GA4GH Tool Registry Service (TRS) and Dockstore - Year One
+
|Databases to support reanalysis of public high-throughput DNA sequencing data
 
|-
 
|-
 
|16
 
|16
−
|Stefan A. POPA
+
|Phillippe Rocca-Serra
−
|Enabling the optimization of open-source biological computational tools with scripting languages
+
|Discovering datasets with DATS in DataMed
 
|-
 
|-
 
|17
 
|17
−
|Wiktor Jurkowski
+
|Anil S. Thanki
−
|Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data
+
|Discovery and visualisation of homologous genes and gene families using Galaxy
 
|-
 
|-
 
|18
 
|18
−
|Anil S. Thanki
+
|Herve Menager
−
|Discovery and visualisation of homologous genes and gene families using Galaxy
+
|EDAM - The ontology of bioinformatics operations, types of data, topics, and data formats (2017 update)"
 
|-
 
|-
 
|19
 
|19
−
|Olga Vrousgou
+
|Stephen Lincoln
−
|The SPOT ontology toolkit : semantics as a service
+
|Emerging public databases of clinical genetic test results: Implications for large scale deployment of precision medicine
 
|-
 
|-
 
|20
 
|20
−
|Tazro Ohta
+
|Stefan A. POPA
−
|Databases to support reanalysis of public high-throughput DNA sequencing data
+
|Enabling the optimization of open-source biological computational tools with scripting languages
 
|-
 
|-
 
|21
 
|21
−
|Phillippe Rocca-Serra
+
|Yo Yehudi
−
|Discovering datasets with DATS in DataMed
+
|Forever in BlueGenes: a next-generation genomic data interface powered by InterMine
 
|-
 
|-
 
|22
 
|22
−
|Chunlei Wu
+
|Kate Voss
−
|BioThings SDK: a toolkit for building high-performance data APIs in biology
+
|Full-stack genomics pipelining with GATK4 + WDL + Cromwell
 
|-
 
|-
 
|23
 
|23
−
|Evanthia Kaimaklioti
+
|Kees van Bochove
−
|Reproducing computational experiments in situ as an interactive figure in a journal article.
+
|Gene Set Variation Analysis in cBioPortal
 
|-
 
|-
 
|24
 
|24
−
|Aditya Bharadwaj
+
|Ismail Moghul
−
|GRAPHSPACE: Stimulating interdisciplinary collaborations in network biology
+
|GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis for GEO Datasets
 
|-
 
|-
 
|25
 
|25
−
|Keiichiro Ono
+
|Silvia Di Giorgio
−
|Revitalizing a classic bioinformatics tool using modern technologies: the case of the Cytoscape Project
+
|GRADitude: A computational tool for the analysis of Grad-seq data
 
|-
 
|-
 
|26
 
|26
−
|Kieran O'Neill
+
|Aditya Bharadwaj
−
|Screw: tools for building reproducible single-cell epigenomics workflows
+
|GRAPHSPACE: Stimulating interdisciplinary collaborations in network biology
 
|-
 
|-
 
|27
 
|27
−
|Stephen Lincoln
+
|Ted Liefeld
−
|Emerging public databases of clinical genetic test results: Implications for large scale deployment of precision medicine
+
|Integrating cloud storage providers for genomic analyses
 
|-
 
|-
 
|28
 
|28
−
|Alexander S Rose
+
|Wiktor Jurkowski
−
|NGL - a molecular graphics library for the web
+
|Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data
 
|-
 
|-
 
|29
 
|29
−
|Matúš Kalaš
+
|Nikola Tesic
−
|BioXSD | BioJSON | BioYAML - Towards unified formats for sequences, alignments, features, and annotations"
+
|Microsatellite instability profiling of TCGA colorectal adenocarcinomas using a Common Workflow Language pipeline
 
|-
 
|-
 
|30
 
|30
−
|Herve Menager
+
|Rickard HammarÈn
−
|EDAM - The ontology of bioinformatics operations, types of data, topics, and data formats (2017 update)"
+
|NGI-RNAseq - a best practice analysis pipeline in Nextflow
 
|-
 
|-
 
|31
 
|31
−
|Chunlei Wu
+
|Alexander S Rose
−
|BioThings SDK: a toolkit for building high-performance data APIs in biology
+
|NGL - a molecular graphics library for the web
 
|-
 
|-
 
|32
 
|32
−
|Kenzo-Hugo Hillion
+
|Luis Pedro Coelho
−
|ToolDog - generating tool descriptors from the ELIXIR tool registry
+
|NGLESS: Perfectly understandable and reproducible metagenomics pipelines using a domain-specific language
 
|-
 
|-
 
|33
 
|33
−
|Uros Sipeitc
+
|Madeleine Ball
−
|Workflow for processing standard bioinformatics formats with SciClone to infer tumor heterogeneity
+
|Open Humans: Opening human health data
 
|-
 
|-
 
|34
 
|34
−
|Ismail Moghul
+
|Ngoc-Vinh Tran
−
|GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis for GEO Datasets
+
|PhyloProfile: an interactive and dynamic visualization tool for multi-layered phylogenetic profiles
 
|-
 
|-
 
|35
 
|35
−
|Wei Wang
+
|Rabie Saidi
−
|Aztec: Automated Biomedical Tool Index with Improved Information Retrieval System
+
|Protein Inpainter: a Message-Passing-based Predictor using Spark GraphX
 
|-
 
|-
 
|36
 
|36
−
|Nikola Tesic
+
|Nivethika Mahasivam
−
|Microsatellite instability profiling of TCGA colorectal adenocarcinomas using a Common Workflow Language pipeline
+
|RADAR-CNS - Research Infrastructure for processing wearable data to improve health
 
|-
 
|-
 
|37
 
|37
−
|Alberto Riva
+
|Ricardo Wurmus
−
|DAMON, an open source framework for reliable and reproducible analysis pipelines"
+
|Reproducible and user-controlled software management in HPC with GNU Guix
 
|-
 
|-
 
|38
 
|38
−
|Yo Yehudi
+
|Evanthia Kaimaklioti
−
|Forever in BlueGenes: a next-generation genomic data interface powered by InterMine
+
|Reproducing computational experiments in situ as an interactive figure in a journal article.
 
|-
 
|-
 
|39
 
|39
−
|Ted Liefeld
+
|Keiichiro Ono
−
|Integrating cloud storage providers for genomic analyses
+
|Revitalizing a classic bioinformatics tool using modern technologies: the case of the Cytoscape Project
 
|-
 
|-
 
|40
 
|40
−
|Silvia Di Giorgio
+
|Kieran O'Neill
−
|GRADitude: A computational tool for the analysis of Grad-seq data
+
|Screw: tools for building reproducible single-cell epigenomics workflows
 
|-
 
|-
 
|41
 
|41
−
|Farah Khan
+
|thomas cokelaer
−
|CWL+Research Object == Complete Provenance
+
|Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis
 
|-
 
|-
 
|42
 
|42
−
|Steffen Möller
+
|Denis Yuen
−
|Workflow-ready bioinformatics packages for Debian-based distributions and this Linux distributionís infrastructure for low-friction reproducible research
+
|The GA4GH Tool Registry Service (TRS) and Dockstore - Year One
 
|-
 
|-
 
|43
 
|43
−
|Madeleine Ball
+
|Olga Vrousgou
−
|Open Humans: Opening human health data
+
|The SPOT ontology toolkit : semantics as a service
 
|-
 
|-
 
|44
 
|44
−
|Kate Voss
+
|Kenzo-Hugo Hillion
−
|Full-stack genomics pipelining with GATK4 + WDL + Cromwell
+
|ToolDog - generating tool descriptors from the ELIXIR tool registry
 
|-
 
|-
 
|45
 
|45
−
|John Fonner
+
|Uros Sipeitc
−
|BioContainers for supercomputers: 2,000+ accessible, discoverable Singularity apps"
+
|Workflow for processing standard bioinformatics formats with SciClone to infer tumor heterogeneity
 
|-
 
|-
 
|46
 
|46
−
|Rabie Saidi
+
|Steffen Mˆller
−
|Protein Inpainter: a Message-Passing-based Predictor using Spark GraphX
+
|Workflow-ready bioinformatics packages for Debian-based distributions and this Linux distributionís infrastructure for low-friction reproducible research
 
|-
 
|-
 
|47
 
|47
−
|Felix Shaw
+
|Kevin Sayers
−
|Collaborative Open Plant Omics: A platform for "FAIR" data for plant science
+
|Workflows interoperability with Nextflow and Common WL
 
|-
 
|-

Revision as of 01:57, 19 June 2017

All BOSC posters will be displayed for the two days of BOSC (July 22-23). ISMB requests that the presenters of even-numbered posters stand by their posters the first day, and odd-numbered poster presenters stand by their posters on the second day. Your poster must be no more than 0.95 m wide x 1.30 m high.

Poster abstracts can be found in the complete program (available soon).

Poster # Title Presenter
1 Monther Alhamdoosh An ensemble approach for gene set testing analysis with reporting capabilities
2 Wei Wang Aztec: Automated Biomedical Tool Index with Improved Information Retrieval System
3 Rishi Nag Bio::DB::HTS ñ accessing HTSlib from Perl
4 John Fonner BioContainers for supercomputers: 2,000+ accessible, discoverable Singularity apps"
5 Carole Goble Bioschemas for life science data
6 Jiwen Xin BioThings Explorer: Utilizing JSON-LD for Linking Biological APIs to Facilitate Knowledge Discovery
7 Chunlei Wu BioThings SDK: a toolkit for building high-performance data APIs in biology
8 Chunlei Wu BioThings SDK: a toolkit for building high-performance data APIs in biology
9 Mat˙ö Kalaö BioJSON | BioYAML - Towards unified formats for sequences, alignments, features, and annotations"
10 Felix Shaw Collaborative Open Plant Omics: A platform for ìFAIRî data for plant science
11 Daria Iakovishina CueSea: quality control tool for Illumina genotyping microarray data, with correction on intensity, clusterization and biological specificity."
12 Stian Soiland-Reyes CWL Viewer: The Common Workflow Language Viewer
13 Farah Khan CWL+Research Object == Complete Provenance
14 Alberto Riva DAMON, an open source framework for reliable and reproducible analysis pipelines"
15 Tazro Ohta Databases to support reanalysis of public high-throughput DNA sequencing data
16 Phillippe Rocca-Serra Discovering datasets with DATS in DataMed
17 Anil S. Thanki Discovery and visualisation of homologous genes and gene families using Galaxy
18 Herve Menager EDAM - The ontology of bioinformatics operations, types of data, topics, and data formats (2017 update)"
19 Stephen Lincoln Emerging public databases of clinical genetic test results: Implications for large scale deployment of precision medicine
20 Stefan A. POPA Enabling the optimization of open-source biological computational tools with scripting languages
21 Yo Yehudi Forever in BlueGenes: a next-generation genomic data interface powered by InterMine
22 Kate Voss Full-stack genomics pipelining with GATK4 + WDL + Cromwell
23 Kees van Bochove Gene Set Variation Analysis in cBioPortal
24 Ismail Moghul GeoDiver: Differential Gene Expression Analysis & Gene-Set Analysis for GEO Datasets
25 Silvia Di Giorgio GRADitude: A computational tool for the analysis of Grad-seq data
26 Aditya Bharadwaj GRAPHSPACE: Stimulating interdisciplinary collaborations in network biology
27 Ted Liefeld Integrating cloud storage providers for genomic analyses
28 Wiktor Jurkowski Introducing the Brassica Information Portal: Towards integrating genotypic and phenotypic Brassica crop data
29 Nikola Tesic Microsatellite instability profiling of TCGA colorectal adenocarcinomas using a Common Workflow Language pipeline
30 Rickard HammarÈn NGI-RNAseq - a best practice analysis pipeline in Nextflow
31 Alexander S Rose NGL - a molecular graphics library for the web
32 Luis Pedro Coelho NGLESS: Perfectly understandable and reproducible metagenomics pipelines using a domain-specific language
33 Madeleine Ball Open Humans: Opening human health data
34 Ngoc-Vinh Tran PhyloProfile: an interactive and dynamic visualization tool for multi-layered phylogenetic profiles
35 Rabie Saidi Protein Inpainter: a Message-Passing-based Predictor using Spark GraphX
36 Nivethika Mahasivam RADAR-CNS - Research Infrastructure for processing wearable data to improve health
37 Ricardo Wurmus Reproducible and user-controlled software management in HPC with GNU Guix
38 Evanthia Kaimaklioti Reproducing computational experiments in situ as an interactive figure in a journal article.
39 Keiichiro Ono Revitalizing a classic bioinformatics tool using modern technologies: the case of the Cytoscape Project
40 Kieran O'Neill Screw: tools for building reproducible single-cell epigenomics workflows
41 thomas cokelaer Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis
42 Denis Yuen The GA4GH Tool Registry Service (TRS) and Dockstore - Year One
43 Olga Vrousgou The SPOT ontology toolkit : semantics as a service
44 Kenzo-Hugo Hillion ToolDog - generating tool descriptors from the ELIXIR tool registry
45 Uros Sipeitc Workflow for processing standard bioinformatics formats with SciClone to infer tumor heterogeneity
46 Steffen Mˆller Workflow-ready bioinformatics packages for Debian-based distributions and this Linux distributionís infrastructure for low-friction reproducible research
47 Kevin Sayers Workflows interoperability with Nextflow and Common WL
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