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Difference between revisions of "BOSC 2018"

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<div style="float:right; maxwidth: 180px; margin-left:25px; margin-right:15px; background-color: #FFFFFF">[[Image:Pear.png|left|The Bosc Pear]]</div>
 
<div style="float:right; maxwidth: 180px; margin-left:25px; margin-right:15px; background-color: #FFFFFF">[[Image:Pear.png|left|The Bosc Pear]]</div>
  
'''[https://gccbosc2018.sched.com/ BOSC 2018] will take place June 26-27, 2018''' (with training days June 24-25 and a CollaborationFest June 28-29) at Reed College in Portland,
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'''Whether you attended GCCBOSC or not, we want to hear from you! Please fill out our [https://gccbosc2018.sched.com/info questionnaire]!'''
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'''[https://gccbosc2018.sched.com/ BOSC 2018] was held June 26-27, 2018''' (with training days June 24-25 and a CollaborationFest June 28-29) at Reed College in Portland,
 
Oregon as part of [https://gccbosc2018.sched.com/ the GCCBOSC 2018 bioinformatics community conference]  
 
Oregon as part of [https://gccbosc2018.sched.com/ the GCCBOSC 2018 bioinformatics community conference]  
co-hosted with the Galaxy Community Conference.'''
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co-hosted with the Galaxy Community Conference. Check out the [https://gccbosc2018.sched.com/ complete schedule]!'''
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We thank GCC co-chairs Dave Clements and Nicole Vasilevsky for all their contributions to making GCCBOSC 2018 a success!
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Brad Chapman's summaries of the conference:
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* [https://github.com/chapmanb/bcbb/blob/master/posts/conferences/bosc2018_day1a.md Day 1]
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* [https://github.com/chapmanb/bcbb/blob/master/posts/conferences/bosc2018_day2.md Day 2]
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[https://twitter.com/OBF_BOSC Follow BOSC on Twitter]: @OBF_BOSC, [https://twitter.com/search?f=tweets&vertical=default&q=%23GCCBOSC&src=typd #GCCBOSC]
  
 
== Important Dates ==
 
== Important Dates ==
  
* February 20, 2018: [[BOSC_Abstract_Submission|Abstract submission]] opens
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*  March 19, 2018: Deadline for submitting abstracts for full talks  
*  March 19, 2018: Deadline for submitting abstracts for talks  
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* '''June 25-30, 2018: [https://gccbosc2018.sched.com/| GCCBOSC2018 (Portland, Oregon)]''' -- main conference June 27-28
* April 10, 2018: Authors notified
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* June 25-26: GCCBOSC Training Days
* May 11, 2018: [https://galaxyproject.org/events/gccbosc2018/register/ Early registration] ends
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* June 27-28: GCCBOSC main conference
* '''June 25-30, 2018''': [https://gccbosc2018.sched.com/ GCCBOSC 2018], Reed College, Portland
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* June 29,30, July 1,2: Collaborative coding at GCCBOSC
* June 29,30, July 1,2: Collaborative coding
 
  
== Why is BOSC parterning with GCC in 2018? ==  
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BOSC has been a part of ISMB since its inception, and we greatly value our
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[[File:FernandoPerez.jpg|100px|left|Fernando Perez|link=https://gccbosc2018.sched.com/directory/speakers]]
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[[File:TracyTeal.jpg|100px|right|Tracy K. Teal|link=https://gccbosc2018.sched.com/directory/speakers]]
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== Keynote Speakers ==
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The [https://gccbosc2018.sched.com/directory/speakers BOSC keynote speakers] will be [https://gccbosc2018.sched.com/speaker/fperez10 Fernando Pérez] (Berkeley Institute for Data Science, University of California Berkeley) and [https://gccbosc2018.sched.com/speaker/tkteal Tracy K. Teal] (The Carpentries). Additionally, GCC's keynote speaker is [https://gccbosc2018.sched.com/speaker/lucia.peixoto Lucia Peixoto].
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 +
 
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== Why is BOSC partnering with GCC in 2018? ==
 +
[[File:Gcc-bosc-2018-logo_boxed_300.png|100px|left|GCCBOSC 2018|link=https://gccbosc2018.sched.com/]]
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BOSC has been a part of [https://www.iscb.org/ismb2018 ISMB] since its inception, and we greatly value our
 
relationships with the ISCB management and the ISMB community.
 
relationships with the ISCB management and the ISMB community.
 
[http://www.open-bio.org/wiki/BOSC_2017 BOSC 2017], which was part of
 
[http://www.open-bio.org/wiki/BOSC_2017 BOSC 2017], which was part of
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* It includes two dedicated training days by members from both the [https://www.open-bio.org/wiki/Main_Page Open Bioinformatics Foundation] and Galaxy communities. This enables focused training on useful tools and approaches, making the conference attractive to anyone who wants to expand their skills.
 
* It includes two dedicated training days by members from both the [https://www.open-bio.org/wiki/Main_Page Open Bioinformatics Foundation] and Galaxy communities. This enables focused training on useful tools and approaches, making the conference attractive to anyone who wants to expand their skills.
  
* There will be two integrated days of collaboration following the conference, merging [https://www.open-bio.org/wiki/Codefest_2017 BOSC Codefest] and [https://gcc2017.sciencesconf.org/resource/page/id/10 Galaxy's Developer and User Hackathon Days]. We hope the integrated collaboration days following training and the conference talks will allow new and existing members of the community to attend and build working relationships.
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* There will be integrated collaboration days after the conference, merging [https://www.open-bio.org/wiki/Codefest_2017 BOSC Codefest] and [https://gcc2017.sciencesconf.org/resource/page/id/10 Galaxy's Developer and User Hackathon Days]. We hope the integrated collaboration days following training and the conference talks will allow new and existing members of the community to attend and build working relationships.
  
 
* The meeting will be held at a great venue in Portland--Reed College--providing an affordable and fun experience for anyone who wants to attend.
 
* The meeting will be held at a great venue in Portland--Reed College--providing an affordable and fun experience for anyone who wants to attend.
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thoughts and plans.
 
thoughts and plans.
  
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'''Whether you attended GCCBOSC or not, we want to hear from you! Please fill out our [https://gccbosc2018.sched.com/info questionnaire]!
 +
'''
 
== Session Topics ==
 
== Session Topics ==
 
BOSC covers all aspects of bioinformatics and open science software, including (but not limited to):
 
BOSC covers all aspects of bioinformatics and open science software, including (but not limited to):
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* Standards and Interoperability
 
* Standards and Interoperability
 
* Data Science
 
* Data Science
* Workflows (may be a joint session with GCC)
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* Workflows
 
* Visualization
 
* Visualization
 
* Medical and Translational Bioinformatics
 
* Medical and Translational Bioinformatics
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* [http://www.scri.ac.uk/staff/petercock Peter Cock] ([http://biopython.org Biopython developer]; [http://www.hutton.ac.uk James Hutton Institute])
 
* [http://www.scri.ac.uk/staff/petercock Peter Cock] ([http://biopython.org Biopython developer]; [http://www.hutton.ac.uk James Hutton Institute])
 
* Christopher Fields (National Center for Supercomputing Applications)
 
* Christopher Fields (National Center for Supercomputing Applications)
* Bastian Greshake (OpenSNP)
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* Bastian Greshake ([https://www.openhumans.org/ Open Humans])
 
* [http://www.bioperl.org/wiki/Hilmar_Lapp Hilmar Lapp] (Center for Genomic and Computational Biology (GCB), Duke University)
 
* [http://www.bioperl.org/wiki/Hilmar_Lapp Hilmar Lapp] (Center for Genomic and Computational Biology (GCB), Duke University)
* [https://twitter.com/monimunozto Mónica Muñoz-Torres]  Phoenix Bioinformatics Corporation
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== Review Committee ==
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Kai Blin*, Christian Brueffer*, Scott Cain, Brad Chapman*, Peter Cock*, Anamaria Crisan, Gianluca Della Vedova, Christopher Fields*, Konrad Förstner*, George Githinji, Bastian Greshake Tzovaras*, Nomi Harris*, Michael Heuer, Karsten Hokamp*, Shaun Jackman, Farah Khan*, Hilmar Lapp, Jessica Maia*, Hervé Ménager, Frank Nothaft, Kieran O'Neill, Konstantin Okonechnikov*, Lorena Pantano*, Surya Saha*, Malvika Sharan, Eric Talevich, Morgan Taschuk, Heather Wiencko*, Jason Williams, Yo Yehudi*
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* Also reviewed late-breaking abstracts
  
 
== Previous BOSCs ==
 
== Previous BOSCs ==
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* If you'd like to join the mailing list for BOSC-related announcements, including the call for abstracts and deadline reminders, please subscribe to [http://lists.open-bio.org/mailman/listinfo/bosc-announce bosc-announce].  This list has low traffic, and your address will be kept private.
 
* If you'd like to join the mailing list for BOSC-related announcements, including the call for abstracts and deadline reminders, please subscribe to [http://lists.open-bio.org/mailman/listinfo/bosc-announce bosc-announce].  This list has low traffic, and your address will be kept private.
 
* If you have questions about the conference, or would like to volunteer to help out, please contact the organizers at [mailto:obf-bosc@googlegroups.com obf-bosc@googlegroups.com].
 
* If you have questions about the conference, or would like to volunteer to help out, please contact the organizers at [mailto:obf-bosc@googlegroups.com obf-bosc@googlegroups.com].
 +
* Whether you attended GCCBOSC or not, we want to hear from you! Please fill out our [https://gccbosc2018.sched.com/info questionnaire]!
  
 
[[Category:BOSC]] [[Category:Conferences]]
 
[[Category:BOSC]] [[Category:Conferences]]
 
[[Category:BOSC Conferences]]
 
[[Category:BOSC Conferences]]

Revision as of 12:59, 29 June 2018

The Bosc Pear

Whether you attended GCCBOSC or not, we want to hear from you! Please fill out our questionnaire!

BOSC 2018 was held June 26-27, 2018 (with training days June 24-25 and a CollaborationFest June 28-29) at Reed College in Portland, Oregon as part of the GCCBOSC 2018 bioinformatics community conference co-hosted with the Galaxy Community Conference. Check out the complete schedule!

We thank GCC co-chairs Dave Clements and Nicole Vasilevsky for all their contributions to making GCCBOSC 2018 a success!

Brad Chapman's summaries of the conference:

Follow BOSC on Twitter: @OBF_BOSC, #GCCBOSC

Important Dates

  • March 19, 2018: Deadline for submitting abstracts for full talks
  • June 25-30, 2018: GCCBOSC2018 (Portland, Oregon) -- main conference June 27-28
  • June 25-26: GCCBOSC Training Days
  • June 27-28: GCCBOSC main conference
  • June 29,30, July 1,2: Collaborative coding at GCCBOSC


Fernando Perez
Tracy K. Teal

Keynote Speakers

The BOSC keynote speakers will be Fernando Pérez (Berkeley Institute for Data Science, University of California Berkeley) and Tracy K. Teal (The Carpentries). Additionally, GCC's keynote speaker is Lucia Peixoto.


Why is BOSC partnering with GCC in 2018?

GCCBOSC 2018

BOSC has been a part of ISMB since its inception, and we greatly value our relationships with the ISCB management and the ISMB community. BOSC 2017, which was part of ISMB/ECCB 2017 in Prague, was an exciting and successful meeting.

Because of our continuing focus on broadening and deepening the BOSC community, we've been exploring ways to reach those in the bioinformatics community who aren’t already part of the audience attracted by ISMB. As part of that exploration, we have looked at other organizations and conferences that have been successful at establishing a strong and growing community of participants. One such conference is the Galaxy Community Conference (GCC).

After much discussion and planning, we'll be participating in a bioinformatics community conference in 2018 that includes both GCC and BOSC. We hope this will help serve the open bioinformatics community in a few ways:

  • It creates a conference with an explicit focus on development, support and maintenance of the interoperable software tools and libraries that enable modern scientific research. We believe the only sustainable way to provide the infrastructure needed for high throughput analyses is to build cooperating, open, diverse communities of programmers and biologists. This conference is where we hope to build and deepen this community.
  • It includes two dedicated training days by members from both the Open Bioinformatics Foundation and Galaxy communities. This enables focused training on useful tools and approaches, making the conference attractive to anyone who wants to expand their skills.
  • There will be integrated collaboration days after the conference, merging BOSC Codefest and Galaxy's Developer and User Hackathon Days. We hope the integrated collaboration days following training and the conference talks will allow new and existing members of the community to attend and build working relationships.
  • The meeting will be held at a great venue in Portland--Reed College--providing an affordable and fun experience for anyone who wants to attend.

We would like to emphasize that this is an experiment for us and we aren’t looking to sever our strong ties with ISMB. We're planning to evaluate the combined GCC and BOSC experience in 2018 and welcome community feedback on all of these thoughts and plans.

Whether you attended GCCBOSC or not, we want to hear from you! Please fill out our questionnaire!

Session Topics

BOSC covers all aspects of bioinformatics and open science software, including (but not limited to):

  • Open Science and Reproducible Research
  • Open Biomedical Data
  • Citizen/Participatory Science
  • Standards and Interoperability
  • Data Science
  • Workflows
  • Visualization
  • Medical and Translational Bioinformatics
  • Developer Tools and Libraries
  • Bioinformatics Open Source Project Progress Reports

BOSC Organizing Committee

Chair

  • Nomi L. Harris (Lawrence Berkeley National Laboratory)

Co-Chairs

Organizing Committee Members

Review Committee

Kai Blin*, Christian Brueffer*, Scott Cain, Brad Chapman*, Peter Cock*, Anamaria Crisan, Gianluca Della Vedova, Christopher Fields*, Konrad Förstner*, George Githinji, Bastian Greshake Tzovaras*, Nomi Harris*, Michael Heuer, Karsten Hokamp*, Shaun Jackman, Farah Khan*, Hilmar Lapp, Jessica Maia*, Hervé Ménager, Frank Nothaft, Kieran O'Neill, Konstantin Okonechnikov*, Lorena Pantano*, Surya Saha*, Malvika Sharan, Eric Talevich, Morgan Taschuk, Heather Wiencko*, Jason Williams, Yo Yehudi*

  • Also reviewed late-breaking abstracts

Previous BOSCs

Code of Conduct

The GCCBOSC 2018 Code of Conduct can be found here.

Contact Us

  • Follow BOSC on Twitter: @OBF_BOSC, #gccbosc
  • If you'd like to join the mailing list for BOSC-related announcements, including the call for abstracts and deadline reminders, please subscribe to bosc-announce. This list has low traffic, and your address will be kept private.
  • If you have questions about the conference, or would like to volunteer to help out, please contact the organizers at obf-bosc@googlegroups.com.
  • Whether you attended GCCBOSC or not, we want to hear from you! Please fill out our questionnaire!