Difference between revisions of "Projects"

Revision as of 12:44, 19 November 2015

BioJS - an open-source library of JavaScript components to visualise biological data
BioHaskell home page, releases
Biocaml - bioinformatics library in the functional programming language OCaml
BioPHP
BioSmalltalk - Bioinformatics in a pure objects environment
BioWeka
BioClipse - visual platform based on Eclipse
CGL - Comparative Genomics Library
Wikiomics - Bioinformatics wiki
Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
OpenBQS - Bibliographic query system
BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
BioMake & Skam - Task management tool, similar to makefiles

Cyclone - provides an open source Java API to the pathway tool BioCyc.
GO-Perl - parsers and object model for OBO ontologies
Chaos-XML - File format based on the sequence modules of the Chado relational schema
Sequence Ontology
Gene Ontology
Obol

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 ==Other related projects==
+* [http://biojs.net/ BioJS] - an open-source library of JavaScript components to visualise biological data
 * BioHaskell [http://biohaskell.org/ home page], [http://hackage.haskell.org/packages/archive/pkg-list.html#cat:bioinformatics releases]
 * [http://biocaml.org Biocaml] - bioinformatics library in the functional programming language OCaml
 * [http://biophp.org BioPHP]
+* [http://biosmalltalk.github.io/web/ BioSmalltalk] - Bioinformatics in a pure objects environment
 * [http://bioweka.sourceforge.net/index.php/Main_Page BioWeka]
 * [http://www.bioclipse.net/ BioClipse] - visual platform based on Eclipse