BOSC 2008 schedule
You may also download the entire BOSC program with the schedule and all
abstracts as a PDF
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Return to BOSC2008 main page.
Schedule (Day 1)
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Friday, July 18
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9:00-9:15
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Kam Dahlquist (Chair BOSC
` 2008)`
Jason Stajich (President
` OBF)`
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\[welcome\] Open
` Bioinformatics Foundation Update `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/introduction-bosc2008/)
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9:15-10:15
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Julian Lombardi
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\[keynote\] Croquet: An Open
Collaboration
` Architecture for Scientific Visualization and Simulation`
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10:15-10:45
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Coffee Break
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10:45-11:10
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Hervé Ménager
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\[cyberinfrastructure\]
` Mobyle: a New Full Web Bioinformatics Framework `[`Abstract`](/wiki/Menager_Mobyle_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/menager-mobyle-bosc2008/)
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11:10-11:35
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Richard Smith
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\[cyberinfrastructure\]
` Intermine – Open Source Data Warehouse and Query Interface `[`Abstract`](/wiki/Smith_R_Intermine_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/smith-inter-mine-bosc2008/)
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11:35-12:00
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Paul Gordon
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\[cyberinfrastructure\] Bridging
` Existing Bioinformatics Tools and Data into Semantic Web Services `[`Abstract`](/wiki/Gordon_SemanticWeb_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/gordon-semantic-web-2008/)
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12:00-12:25
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Peter Rice
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\[cyberinfrastructure\]
` Soaplab2: More Reliable Sesame Door to Bioinformatics Programs `[`Abstract`](/wiki/Rice_Soaplab2_abstract.pdf)
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12:30-1:30
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Lunch
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1:30-1:50
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Barry Sanders & David Arcoleo
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\[cyberinfrastructure\]
` BeeSpace:`` ``An Interactive System for`
` Functional Analysis `[`Abstract`](/wiki/Sanders_Arcoleo_BeeSpace_abstract.pdf)[`**SLIDES** (PPT)`](http://www.beespace.uiuc.edu/files/BeeSpaceBOSC2008_v3.ppt)
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1:50-2:10
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Andrew Jenkinson
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\[cyberinfrastructure\]
` BioDas Project Update `[`Abstract`](/wiki/Jenkinson_BioDas_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/andy-jenkinson-bosc-das-2008/)
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2:10-2:30
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Kazuharu Arakawa
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\[visualization\] E-Cell 3D:
3-Dimensional
` Visualization of Dynamic Cell Simulation `[`Abstract`](/wiki/Arakawa_E-Cell3D_abstract.pdf)` `[`**SLIDES**`](http://www.g-language.org/data/gaou/presentation/BOSC08-ECell3D.pdf)
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2:30-2:50
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Peter Rice
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\[bio\*update\] EMBOSS:
` European Molecular Biology Open Software Suite `[`Abstract`](/wiki/Rice_EMBOSS_abstract.pdf)
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2:50-3:10
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Michael Heuer
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\[bio\*update\] BioJava
` Project Update `[`Abstract`](/wiki/Heuer_BioJava_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/heuer-bio-java-bosc2008/)
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3:10-3:18
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Justin Wilson
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\[lightning talk\] Use the
` Make Utility for the Maintenance of Complex Bioinformatics Pipelines `[`Abstract`](/wiki/Wilson_Make_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/wilson-make-bosc2008/)` `
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3:20-3:28
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Brian O'Connor
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\[lightning talk\] SolexaTools: An Open
Source Sequence Analysis Framework
[Abstract](/wiki/OConnor_SolexaTools_abstract.pdf)
[\*\*SLIDES\*\*](http://www.slideshare.net/bosc_2008/o-connor-solexa-tools-bosc2008/)
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3:30-4:00
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Coffee Break
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4:00-5:30
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Additional Lightning
Talks/Demos/BOFs
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Schedule (Day 2)
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Saturday, July 19
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9:00-9:05
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Kam Dahlquist
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Announcements
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9:05-9:30
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Mark Wilkinson
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\[workflows\] Interoperability
` with BioMoby – Past, Present, and Future `[`Abstract`](/wiki/Wilkinson_BioMoby_abstract.pdf)
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9:30-9:55
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Joshua Orvis
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\[workflows\] Ergatis: A
` Web-based Bioinformatics Pipeline Management and Collaborative Development`
` System `[`Abstract`](/wiki/Orvis_Ergatis_abstract.pdf)
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9:55-10:15
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Aleksi Kallio
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\[workflows\] Chipster – User
` Friendly DNA Microarray Analysis Software `[`Abstract`](/wiki/Kallio_Chipster_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/kallio-chipster-bosc2008/)
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10:15-10:45
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Coffee Break
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10:45-11:10
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Jiten Bhagat
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\[workflows\] myExperiment:
` Social Software for Sharing Workflows `[`Abstract`](/wiki/Bhagat_myExperiment_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/bhagat-myexperiment-bosc2008/)
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11:10-11:30
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Todd Smith
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\[workflows\] BioHDF: Open Binary
` File Formats for Large Scale Data Management `[`Abstract`](/wiki/Smith_T_BioHDF_Abstract_revised.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/smith-t-bio-hdf-bosc2008/)
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11:30-11:50
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Aaron Kitzmiller
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\[open source software\] The
` Open HeliSphere``TM`` Project: True Open Source from the Inventors of`
` True Single Molecule Sequencing `[`Abstract`](/wiki/Kitzmiller_OpenHeliSphere_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/kitzmiller-openhelisphereproject-bosc2008/)
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11:50-12:10
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Ed Lee
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\[open source software\]
` Apollo: a Sequence Annotation Editor (with demonstration to follow) `[`Abstract`](/wiki/Lee_Apollo_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/lee-apollo-bosc2008/)
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12:30-1:30
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Lunch
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1:30-1:50
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Hilmar Lapp
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\[bio\*update\] BioSQL
` Reloaded: 1.0 Release, PhyloDB Module, and Future Features `[`Abstract`](/wiki/Lapp_BioSQL_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/hlapp/lapp-biosql-bosc2008)
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1:50-2:10
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Syed Haider
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\[bio\*update\] EMBRACE –
` BioMart Developments and Future `[`Abstract`](/wiki/Haider_EMBRACE_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/haider-embrace-bosc2008/)
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2:10-2:30
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Tiago Antão
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\[bio\*update\] Biopython
` Project Update 2008 `[`Abstract`](/wiki/Antao_Biopython_abstract.pdf)` `[`**SLIDES**`](http://www.slideshare.net/bosc_2008/antao-biopython-bosc2008/)
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2:30-2:38
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Scott Cain
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\[lightning talk\]
[GMOD](http://gmod.org/wiki/index.php/Community_Annotation_System)
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2:38-2:46
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Kannan Vijayan & Dustin Cram
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\[lightning talk\] Fiesta
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2:46-2:54
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Ben Faga
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\[lightning talk\] CMap: A Comparative
Viewer
[\*\*SLIDES\*\*](http://www.slideshare.net/bosc_2008/faga-c-map-bosc2008/)
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2:54-3:02
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John Greene
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\[lightning talk\] ERIC: Enteropathogen
Resource Information Center
[\*\*SLIDES\*\*](http://www.slideshare.net/bosc_2008/greene-bosc2008/)
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3:02-3:10
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Aaron J. Mackey
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\[lightning talk\] Off the Beaten
Track--Buried Treasure and Hidden Jewels in BioPerl
[\*\*SLIDES\*\*](http://www.slideshare.net/bosc_2008/mackey-bio-perl-bosc2008/)
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3:10-3:18
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Saravanamuttu Gnaneshan
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\[lightning talk\] Web Application
Developments with Open Bio in Public health Informatics
[\*\*SLIDES\*\*](http://www.slideshare.net/bosc_2008/gnaneshan-public-health-bosc2008/)
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3:18-3:26
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Pjotr Prins (*in absentia*)
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\[lightning talk\] BioLib
[\*\*SLIDES\*\*](http://www.slideshare.net/bosc_2008/prins-bio-lib-bosc2008/)
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3:26-3:30
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Gregg Helt
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\[lightning talk\] Exploratory Analysis
with DAS/2 and the Integrated Genome Browser (IGB)
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3:30-4:00
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Coffee Break
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4:00-5:30
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Lightning Talks/Demos/BOFs
\[demo\] Ergatis - Joshua Orvis
\[lightning talk\] Genographer - Travis
Banks
[\*\*SLIDES\*\*](http://www.slideshare.net/bosc_2008/banks-genographer-bosc2008/)
\[BOFs\] See
[BOSC_2008/Birds-of-a-Feather](BOSC_2008/Birds-of-a-Feather "wikilink")
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Return to [ BOSC2008](BOSC_2008 "wikilink") main page.
