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* Return to '''[[BOSC_2010 | BOSC 2010]]''' main page. | * Return to '''[[BOSC_2010 | BOSC 2010]]''' main page. | ||
+ | * '''BOSC 2010 Proceedings: The [http://www.biomedcentral.com/1471-2105/11?issue=S12 Proceedings] have been published as of 21 December 2010 in ''BMC Bioinformatics''.''' | ||
* Click '''[[Media:BOSC2010_program_20100615_frontmatter.pdf | here]]''' to download the BOSC 2010 program and schedule as a PDF file (5 pages, 300k) | * Click '''[[Media:BOSC2010_program_20100615_frontmatter.pdf | here]]''' to download the BOSC 2010 program and schedule as a PDF file (5 pages, 300k) | ||
* Click '''[[Media:BOSC2010_program_20100615_compiledabstracts.pdf | here]]''' to download all abstracts compiled into one PDF file (2 MB). | * Click '''[[Media:BOSC2010_program_20100615_compiledabstracts.pdf | here]]''' to download all abstracts compiled into one PDF file (2 MB). | ||
* Important '''[[BOSC_2010#Information_for_Speakers | Information for Speakers]]''' | * Important '''[[BOSC_2010#Information_for_Speakers | Information for Speakers]]''' | ||
− | * '''''Slides''''' for | + | * '''''Slides''''' for both days' talks are up on [http://www.slideshare.net/bosc2010/presentations SlideShare] under the username "bosc2010". Individual links to each talk are posted on the schedule below. |
== Schedule == | == Schedule == | ||
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| 9:00-9:15AM | | 9:00-9:15AM | ||
| Kam Dahlquist | | Kam Dahlquist | ||
− | | [Welcome] Introduction to the <nowiki> | + | | [Welcome] Introduction to the <nowiki>OBF</nowiki> and Welcome to BOSC 2010 |
|- | |- | ||
| 9:15-10:15 | | 9:15-10:15 | ||
| Guy Coates | | Guy Coates | ||
− | | [Keynote] [[BOSC_2010#Guy_Coates | Clouds: all fluff and no substance?]] | + | | [Keynote] [[BOSC_2010#Guy_Coates | Clouds: all fluff and no substance?]] [http://www.slideshare.net/bosc2010/coates-bosc2010-cloudsfluffandnosubstance ***SLIDES***] |
|- | |- | ||
| '''10:15-10:45''' | | '''10:15-10:45''' | ||
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| 11:05-11:25 | | 11:05-11:25 | ||
| M. Hanna | | M. Hanna | ||
− | | [Cloud Computing/HT 'omics Data] [[Media:18_BOSC2010.pdf | The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data]] | + | | [Cloud Computing/HT 'omics Data] [[Media:18_BOSC2010.pdf | The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data]] [http://www.slideshare.net/bosc2010/hanna-bosc2010 ***SLIDES***] |
|- | |- | ||
| 11:25-11:45 | | 11:25-11:45 | ||
| Brian D. O'Connor | | Brian D. O'Connor | ||
− | | [Cloud Computing/HT 'omics Data] [[Media:39_BOSC2010.pdf | SeqWare Query Engine: Storing and Searching Sequence Data in the Cloud]] | + | | [Cloud Computing/HT 'omics Data] [[Media:39_BOSC2010.pdf | SeqWare Query Engine: Storing and Searching Sequence Data in the Cloud]] [http://www.slideshare.net/bosc2010/o-connor-bosc2010 ***SLIDES***] |
|- | |- | ||
| 11:45-12:00PM | | 11:45-12:00PM | ||
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| 12:00-12:15 | | 12:00-12:15 | ||
| Ben Langmead | | Ben Langmead | ||
− | | [Cloud Computing/HT 'omics Data] [[Media:42_BOSC2010.pdf | Cloud-scale genomics: examples and lessons]] | + | | [Cloud Computing/HT 'omics Data] [[Media:42_BOSC2010.pdf | Cloud-scale genomics: examples and lessons]] [http://www.slideshare.net/bosc2010/langmead-bosc2010-cloudgenomics ***SLIDES***] |
|- | |- | ||
| 12:15-12:30 | | 12:15-12:30 | ||
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| 2:00-2:20 | | 2:00-2:20 | ||
| Steffen Möller | | Steffen Möller | ||
− | | [Cloud Computing] [[Media:26_BOSC2010.pdf | Community-driven computational biology with Debian and Taverna]] | + | | [Cloud Computing] [[Media:26_BOSC2010.pdf | Community-driven computational biology with Debian and Taverna]] [http://www.slideshare.net/bosc2010/moeller-bosc2010-debiantaverna ***SLIDES***] |
|- | |- | ||
| 2:20-2:40 | | 2:20-2:40 | ||
| Darin London | | Darin London | ||
− | | [Cloud Computing/HT 'omics Data] [[Media:3_BOSC2010.pdf | Dealing with the Data Deluge: What can the Robotics Community Teach us?]] | + | | [Cloud Computing/HT 'omics Data] [[Media:3_BOSC2010.pdf | Dealing with the Data Deluge: What can the Robotics Community Teach us?]] [http://www.slideshare.net/bosc2010/london-bosc2010 ***SLIDES***] |
|- | |- | ||
| 2:40-3:00 | | 2:40-3:00 | ||
| Nyasha Chambwe | | Nyasha Chambwe | ||
− | | [HT 'omics Data] [[Media:19_BOSC2010.pdf | The Goby framework: towards efficient next-generation sequencing data analysis]] | + | | [HT 'omics Data] [[Media:19_BOSC2010.pdf | The Goby framework: towards efficient next-generation sequencing data analysis]] [http://www.slideshare.net/bosc2010/chambwe-bosc2010 ***SLIDES***] |
|- | |- | ||
| 3:00-3:15 | | 3:00-3:15 | ||
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| 3:15-3:30 | | 3:15-3:30 | ||
| Jens Lichtenberg | | Jens Lichtenberg | ||
− | | [HT 'omics Data] [[Media:28_BOSC2010.pdf | Concurrent Bioinformatics Software for Discovering Genome-wide Patterns and Word-based Genomic Signatures]] | + | | [HT 'omics Data] [[Media:28_BOSC2010.pdf | Concurrent Bioinformatics Software for Discovering Genome-wide Patterns and Word-based Genomic Signatures]] [http://www.slideshare.net/bosc2010/lichtenberg-bosc2010-wordseeker ***SLIDES***] |
|- | |- | ||
| 3:30-3:38 | | 3:30-3:38 | ||
− | | Chris Hemmerich | + | | [http://gmod.org/wiki/User:Chemmeri Chris Hemmerich] |
− | | [HT 'omics Data] [[Media:30_BOSC2010.pdf | Automated Annotation of NGS Transcriptome Data using ISGA and Ergatis]] | + | | [HT 'omics Data] [[Media:30_BOSC2010.pdf | Automated Annotation of NGS Transcriptome Data using ISGA and Ergatis]] [http://www.slideshare.net/bosc2010/hemmerich-bosc2010-isgaergatis ***SLIDES***] |
|- | |- | ||
| '''3:38-4:00''' | | '''3:38-4:00''' | ||
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| 4:45-4:55 | | 4:45-4:55 | ||
| Christian M Zmasek | | Christian M Zmasek | ||
− | | [Semantic Web] [[Media:25_BOSC2010.pdf | Connecting TOPSAN to Computational Analysis]] | + | | [Semantic Web] [[Media:25_BOSC2010.pdf | Connecting TOPSAN to Computational Analysis]] [http://www.slideshare.net/bosc2010/zmasek-bosc2010-topsan ***SLIDES***] |
|- | |- | ||
| 4:55-5:10 | | 4:55-5:10 | ||
| Jianjiong Gao | | Jianjiong Gao | ||
− | | [OS Software] [[Media:20_BOSC2010.pdf | Musite: Global Prediction of General and Kinase-Specific Phosphorylation Sites]] | + | | [OS Software] [[Media:20_BOSC2010.pdf | Musite: Global Prediction of General and Kinase-Specific Phosphorylation Sites]] [http://www.slideshare.net/bosc2010/gao-bosc2010-musite ***SLIDES***] |
|- | |- | ||
| 5:10-5:18 | | 5:10-5:18 | ||
| Hervé Ménager | | Hervé Ménager | ||
− | | [Lightning Talk] [https://projets.pasteur.fr/wiki/mobyle/ Mobyle Bioinformatics Web Portal: project update] | + | | [Lightning Talk] [https://projets.pasteur.fr/wiki/mobyle/ Mobyle Bioinformatics Web Portal: project update] [http://www.slideshare.net/bosc2010/menager-bosc2010-mobyle ***SLIDES***] |
|- | |- | ||
| 5:18-5:26 | | 5:18-5:26 | ||
| Stuart Owen | | Stuart Owen | ||
− | | [Lightning Talk] [http://www.taverna.org.uk/ The Taverna 2.2 Workflow Workbench with a case study using it for Next Gen Sequencing of African cows] | + | | [Lightning Talk] [http://www.taverna.org.uk/ The Taverna 2.2 Workflow Workbench with a case study using it for Next Gen Sequencing of African cows] [http://www.slideshare.net/bosc2010/owen-bosc2010-taverna22cows ***SLIDES***] |
|- | |- | ||
| 5:26-5:34 | | 5:26-5:34 | ||
| Jiten Bhagat | | Jiten Bhagat | ||
− | | [Lightning Talk] [http://www.biocatalogue.org/ BioCatalogue - the Public Curated Registry of Life Science Web Services] | + | | [Lightning Talk] [http://www.biocatalogue.org/ BioCatalogue - the Public Curated Registry of Life Science Web Services] [http://www.slideshare.net/bosc2010/bhagat-bosc2010-biocatalogue ***SLIDES***] |
|- | |- | ||
| 5:34-5:42 | | 5:34-5:42 | ||
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| 5:42-5:50 | | 5:42-5:50 | ||
| Aleksi Kallio | | Aleksi Kallio | ||
− | | [Lightning Talk] [http://chipster.sourceforge.net/ Connecting Chipster genome browser to the cloud] | + | | [Lightning Talk] [http://chipster.sourceforge.net/ Connecting Chipster genome browser to the cloud] [http://www.slideshare.net/bosc2010/kallio-bosc2010-chipstercloud ***SLIDES***] |
|- | |- | ||
| 5:50-5:58 | | 5:50-5:58 | ||
| Christopher Bottoms | | Christopher Bottoms | ||
− | | [Lightning Talk] [http://search.cpan.org/~molecules/Bio-SNP-Inherit-0.00100001-TRIAL/lib/Bio/SNP/Inherit.pm SNP Allele Designations (Bio::SNP::Inherit)] | + | | [Lightning Talk] [http://search.cpan.org/~molecules/Bio-SNP-Inherit-0.00100001-TRIAL/lib/Bio/SNP/Inherit.pm SNP Allele Designations (Bio::SNP::Inherit)] [http://www.slideshare.net/bosc2010/bottoms-bosc2010-biosnpinherit ***SLIDES***] |
|- | |- | ||
| 5:58-6:06 | | 5:58-6:06 | ||
| Tomasz Puton | | Tomasz Puton | ||
− | | [Lightning Talk] [http://github.com/krother/biopython BioPython modules for handling RNA sequences containing modified nucleosides] | + | | [Lightning Talk] [http://github.com/krother/biopython BioPython modules for handling RNA sequences containing modified nucleosides] [http://www.slideshare.net/bosc2010/puton-bosc2010-biopythonmodulesrna ***SLIDES***] |
|- | |- | ||
| 6:06-6:15 | | 6:06-6:15 | ||
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| 6:45 | | 6:45 | ||
| | | | ||
− | | <nowiki> | + | | <nowiki>OBF</nowiki> Board Meeting and No-host Dinner; Location: Legal Seafood |
|- | |- | ||
| | | | ||
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| 9:15-10:15 | | 9:15-10:15 | ||
| Ross Gardler | | Ross Gardler | ||
− | | [Keynote] [[BOSC_2010#Ross_Gardler | Community Development at the Apache Software Foundation]] | + | | [Keynote] [[BOSC_2010#Ross_Gardler | Community Development at the Apache Software Foundation]] [http://www.slideshare.net/bosc2010/gardler-bosc2010-communitydevelopmentattheasf ***SLIDES***] |
|- | |- | ||
| '''10:15-10:45''' | | '''10:15-10:45''' | ||
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| 10:45-11:05 | | 10:45-11:05 | ||
| Christopher Fields | | Christopher Fields | ||
− | | [Bio* Update] [[Media:22_BOSC2010.pdf | Towards a Modern BioPerl: BioPerl Update 2010]] | + | | [Bio* Update] [[Media:22_BOSC2010.pdf | Towards a Modern BioPerl: BioPerl Update 2010]] [http://www.slideshare.net/bosc2010/fields-bosc2010-bioperl ***SLIDES***] |
|- | |- | ||
| 11:05-11:20 | | 11:05-11:20 | ||
| Raoul J.P. Bonnal | | Raoul J.P. Bonnal | ||
− | | [Bio* Update] [[Media:15_BOSC2010.pdf | BioRuby 2010 updates: moving to agile bioinformatics]] | + | | [Bio* Update] [[Media:15_BOSC2010.pdf | BioRuby 2010 updates: moving to agile bioinformatics]] [http://www.slideshare.net/bosc2010/bonnal-bosc2010-bioruby ***SLIDES***] |
|- | |- | ||
| 11:20-11:35 | | 11:20-11:35 | ||
| Peter Rice | | Peter Rice | ||
− | | [Bio* Update] [[Media:14_BOSC2010.pdf | EMBOSS: The European Molecular Biology Open Software Suite]] | + | | [Bio* Update] [[Media:14_BOSC2010.pdf | EMBOSS: The European Molecular Biology Open Software Suite]] [http://www.slideshare.net/bosc2010/rice-bosc2010-emboss ***SLIDES***] |
|- | |- | ||
| 11:35-11:50 | | 11:35-11:50 | ||
| Brad Chapman | | Brad Chapman | ||
− | | [Bio* Update] [[Media:16_BOSC2010.pdf | Biopython Project Update]] | + | | [Bio* Update] [[Media:16_BOSC2010.pdf | Biopython Project Update 2010]] [http://www.slideshare.net/bosc2010/chapman-bosc2010-biopython ***SLIDES***] |
|- | |- | ||
| 11:50-12:05PM | | 11:50-12:05PM | ||
| Tiago Antao | | Tiago Antao | ||
− | | [OS software] [[Media:13_BOSC2010.pdf | interPopula: Database and tool integration for population genetics using Python]] | + | | [OS software] [[Media:13_BOSC2010.pdf | interPopula: Database and tool integration for population genetics using Python]] [http://www.slideshare.net/tiago/inter-popula ***SLIDES***] |
|- | |- | ||
| 12:05-12:20 | | 12:05-12:20 | ||
| Laurent Gautier | | Laurent Gautier | ||
− | | [Bio* Update] [[Media:2_BOSC2010.pdf | Bioconductor with Python, What else ?]] | + | | [Bio* Update] [[Media:2_BOSC2010.pdf | Bioconductor with Python, What else ?]] [http://www.slideshare.net/bosc2010/gautier-bosc2010-pythonbioconductor ***SLIDES***] |
|- | |- | ||
| 12:20-12:30 | | 12:20-12:30 | ||
| Eric W Talevich | | Eric W Talevich | ||
− | | [Bio* Update] [[Media:8_BOSC2010.pdf | Bio.Phylo: A unified phylogenetics toolkit for Biopython]] | + | | [Bio* Update] [[Media:8_BOSC2010.pdf | Bio.Phylo: A unified phylogenetics toolkit for Biopython]] [http://www.slideshare.net/etalevich/biophylo-phylogenetics-in-biopython-bosc-2010 ***SLIDES***] |
|- | |- | ||
| '''12:30-2:00''' | | '''12:30-2:00''' | ||
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| 2:00-2:20 | | 2:00-2:20 | ||
| Simon Mercer | | Simon Mercer | ||
− | | [OS Software Framework] [[Media:9_BOSC2010.pdf | The Microsoft Biology Foundation]] | + | | [OS Software Framework] [[Media:9_BOSC2010.pdf | The Microsoft Biology Foundation]] [http://www.slideshare.net/bosc2010/mercer-bosc2010-microsoftframework ***SLIDES***] |
|- | |- | ||
| 2:20-2:40 | | 2:20-2:40 | ||
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| 2:40-3:00 | | 2:40-3:00 | ||
| Morris A. Swertz | | Morris A. Swertz | ||
− | | [OS Software/Code Generation] [[Media:24_BOSC2010.pdf | MOLGENIS: rapid prototyping of biosoftware at the push of a button]] | + | | [OS Software/Code Generation] [[Media:24_BOSC2010.pdf | MOLGENIS: rapid prototyping of biosoftware at the push of a button]] [http://www.slideshare.net/bosc2010/swertz-bosc2010-molgenis ***SLIDES***] |
|- | |- | ||
| 3:00-3:10 | | 3:00-3:10 | ||
| Alexandros Kanterakis | | Alexandros Kanterakis | ||
− | | [OS Software/Code Generation] [[Media:17_BOSC2010.pdf | Generating a data platform for microarray gene expression experiments using MOLGENIS and MAGE-TAB]] | + | | [OS Software/Code Generation] [[Media:17_BOSC2010.pdf | Generating a data platform for microarray gene expression experiments using MOLGENIS and MAGE-TAB]] [http://www.slideshare.net/bosc2010/kanterakis-bosc2010-molgenis ***SLIDES***] |
|- | |- | ||
| 3:10-3:25 | | 3:10-3:25 | ||
| Sebastian J. Schultheiss | | Sebastian J. Schultheiss | ||
− | | [Web Services] [[Media:5_BOSC2010.pdf | Long-term availability of bioinformatics web services]] | + | | [Web Services] [[Media:5_BOSC2010.pdf | Long-term availability of bioinformatics web services]] [http://www.slideshare.net/bosc2010/schultheiss-bosc2010-persistancewebservices ***SLIDES***] |
|- | |- | ||
| '''3:25-4:00''' | | '''3:25-4:00''' | ||
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|- | |- | ||
| 4:00-4:15 | | 4:00-4:15 | ||
− | | Lincoln Stein | + | | [http://gmod.org/wiki/User:Lstein Lincoln Stein] |
− | | [Visualization] [[Media:34_BOSC2010.pdf | GBrowse2]] | + | | [Visualization] [[Media:34_BOSC2010.pdf | GBrowse2]] [http://prezi.com/xwpsks7tnnd8/gbrowse-20-bosc-talk/ ***SLIDES***] |
|- | |- | ||
| 4:15-4:35 | | 4:15-4:35 | ||
| Gary D. Bader | | Gary D. Bader | ||
− | | [Visualization] [[Media:12_BOSC2010.pdf | Cytoscape Web: An interactive, customizable web-based network browser]] | + | | [Visualization] [[Media:12_BOSC2010.pdf | Cytoscape Web: An interactive, customizable web-based network browser]] [http://www.slideshare.net/bosc2010/bader-bosc2010-cytoweb ***SLIDES***] |
|- | |- | ||
| 4:35-4:50 | | 4:35-4:50 | ||
| Nobuaki Kono | | Nobuaki Kono | ||
− | | [Visualization] [[Media:38_BOSC2010.pdf | Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API]] | + | | [Visualization] [[Media:38_BOSC2010.pdf | Pathway Projector: Web-Based Zoomable Pathway Browser Using KEGG Atlas and Google Maps API]] [http://www.slideshare.net/bosc2010/kono-bosc2010-pathwayprojector ***SLIDES***] |
|- | |- | ||
| 4:50-5:05 | | 4:50-5:05 | ||
| James A. Morris | | James A. Morris | ||
− | | [Visualization] [[Media:7_BOSC2010.pdf | Evoker: a visualization tool for genotype intensity data]] | + | | [Visualization] [[Media:7_BOSC2010.pdf | Evoker: a visualization tool for genotype intensity data]] [http://www.slideshare.net/bosc2010/morris-bosc2010-evoker ***SLIDES***] |
|- | |- | ||
| 5:05-5:20 | | 5:05-5:20 | ||
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| 5:20-5:30 | | 5:20-5:30 | ||
| Iddo Friedberg | | Iddo Friedberg | ||
− | | [Visualization] [[Media:32_BOSC2010.pdf | IPRStats: visualization and analysis of InterProScan Results]] | + | | [Visualization] [[Media:32_BOSC2010.pdf | IPRStats: visualization and analysis of InterProScan Results]] [http://www.slideshare.net/bosc2010/friedberg-bosc2010-iprstats ***SLIDES***] |
|- | |- | ||
| 5:30-6:00 | | 5:30-6:00 | ||
Line 250: | Line 251: | ||
|[[BOSC_2010/Birds-of-a-Feather | Birds of a Feather]] | |[[BOSC_2010/Birds-of-a-Feather | Birds of a Feather]] | ||
|} | |} | ||
+ | |||
+ | [[Category:BOSC]] [[Category:Conferences]] | ||
+ | [[Category:BOSC Conferences]] |
Latest revision as of 18:13, 7 September 2015
- Return to BOSC 2010 main page.
- BOSC 2010 Proceedings: The Proceedings have been published as of 21 December 2010 in BMC Bioinformatics.
- Click here to download the BOSC 2010 program and schedule as a PDF file (5 pages, 300k)
- Click here to download all abstracts compiled into one PDF file (2 MB).
- Important Information for Speakers
- Slides for both days' talks are up on SlideShare under the username "bosc2010". Individual links to each talk are posted on the schedule below.
Schedule
Click on the talk title to view the individual abstract as a PDF file.