Please visit our ***NEW*** OBF/BOSC website: https://www.open-bio.org/ |
-
Difference between revisions of "BOSC 2012 Schedule"
From Open Bioinformatics Foundation
(→Day 2: Saturday, July 14 (Room TBA)) |
m |
||
(60 intermediate revisions by 3 users not shown) | |||
Line 1: | Line 1: | ||
− | + | [[File:Pear.png|100px|right|BOSC logo|link=BOSC_2012]] | |
− | {| border="1" cellspacing="0" cellpadding=" | + | '''[[Media:BOSC2012_schedule.pdf | Click here to download this schedule as PDF]]''' |
+ | |||
+ | '''[http://www.open-bio.org/bosc2012/BOSC2012-program.pdf Complete program as PDF]''' | ||
+ | |||
+ | = Day 1: Friday, July 13 = | ||
+ | |||
+ | {| border="1" cellspacing="0" cellpadding="7" | ||
! Time | ! Time | ||
! Topic | ! Topic | ||
Line 7: | Line 13: | ||
|- | |- | ||
| 7:30-9:00 | | 7:30-9:00 | ||
− | | | + | | Registration (Early arrival is recommended as there are usually long lines) |
− | (Early arrival is recommended as there are usually long lines) | ||
| '''Registration''' | | '''Registration''' | ||
|- | |- | ||
Line 16: | Line 21: | ||
|- | |- | ||
| 9:15-10:15 | | 9:15-10:15 | ||
− | | [Keynote] Science Wants to Be Open - If Only We Could Get Out of Its Way | + | | [Keynote] Science Wants to Be Open - If Only We Could Get Out of Its Way ** [http://www.youtube.com/watch?v=oWZzUe3Kxeo Talk] ** |
| Jonathan Eisen (University of California, Davis) | | Jonathan Eisen (University of California, Davis) | ||
|- | |- | ||
Line 25: | Line 30: | ||
| 10:45-12:30 | | 10:45-12:30 | ||
| Session: Cloud and Parallel Computing | | Session: Cloud and Parallel Computing | ||
− | | Chair: | + | | Chair: Richard Holland |
|- | |- | ||
− | || | + | || 10:45 |
− | | [Cloud] Cloudgene - an execution platform for MapReduce programs in public and private clouds | + | | [Cloud] [http://www.slideshare.net/jandot/l-forer-cloudgene-an-execution-platform-for-mapreduce-programs-in-public-and-private-clouds Cloudgene - an execution platform for MapReduce programs in public and private clouds] |
− | | Sebastian | + | | Sebastian Schönherr |
|- | |- | ||
− | | | + | | 11:10 |
− | | [Cloud] Data reduction and division approaches for assembling short-read data in the cloud | + | | [Cloud] [http://www.slideshare.net/jandot/ct-brown-doing-nextgen-sequencing-analysis-in-the-cloud Data reduction and division approaches for assembling short-read data in the cloud] |
| C. Titus Brown | | C. Titus Brown | ||
|- | |- | ||
− | | | + | | 11:35 |
− | | [Cloud] MGTAXA - a toolkit and a Web server for predicting taxonomy of the metagenomic sequences with Galaxy front-end and parallel computational back-end | + | | [Cloud] [http://www.slideshare.net/jandot/a-tovchigrechko-mgtaxa-a-toolkit-and-webserver-for-predicting-taxonomy-of-the-metagenomic-sequences MGTAXA - a toolkit and a Web server for predicting taxonomy of the metagenomic sequences with Galaxy front-end and parallel computational back-end] |
| Andrey Tovchigrechko | | Andrey Tovchigrechko | ||
|- | |- | ||
− | | | + | | 12:00 |
− | | [Cloud] Workflows on the Cloud - Scaling for National Service | + | | [Cloud] [http://www.slideshare.net/jandot/wolstencroft-k-workflows-on-the-cloud-scaling-for-national-service Workflows on the Cloud - Scaling for National Service] |
− | | | + | | Katy Wolstencroft |
|- | |- | ||
− | | 15 | + | | 12:15 |
− | | [Cloud] How to use BioJava to calculate one billion protein structure alignments at the RCSB PDB website | + | | [Cloud] [http://www.slideshare.net/jandot/a-prlic-biojava-update How to use BioJava to calculate one billion protein structure alignments at the RCSB PDB website] |
| Andreas Prlic | | Andreas Prlic | ||
|- | |- | ||
Line 52: | Line 57: | ||
|- | |- | ||
| 12:30-2:00 | | 12:30-2:00 | ||
− | | '''Poster Session I''' | + | | '''Poster Session I''' |
| | | | ||
|- | |- | ||
| 2:00-3:30 | | 2:00-3:30 | ||
| Session: Genome-scale Data Management | | Session: Genome-scale Data Management | ||
− | | Chair: | + | | Chair: Ronald Taylor |
|- | |- | ||
− | | | + | | 2:00 |
− | | [Genome-scale] Using HDF5 to Work With Large Quantities of Biological Data | + | | [Genome-scale] [http://www.slideshare.net/jandot/d-robinson-using-hdf5-to-work-with-large-quantities-of-rich-biological-data Using HDF5 to Work With Large Quantities of Biological Data] |
| Dana Robinson | | Dana Robinson | ||
|- | |- | ||
− | | 15 | + | | 2:15 |
− | | [Genome-scale] Large scale data management in Chipster 2 workflow environment | + | | [Genome-scale] [http://www.slideshare.net/jandot/a-kallio-large-scale-data-management-in-chipster-2-workflow-environment Large scale data management in Chipster 2 workflow environment] |
| Aleksi Kallio | | Aleksi Kallio | ||
|- | |- | ||
− | | | + | | 2:30 |
| [Genome-scale] JBrowse 2012 | | [Genome-scale] JBrowse 2012 | ||
− | | Ian Holmes | + | | (Ian Holmes is sick--instead we will see a short talk on JBrowse by Robert Buels) |
+ | |- | ||
+ | | 2:38 | ||
+ | | [http://www.slideshare.net/jandot/b-chapman-codefest-bosc2012 Report] on [http://www.open-bio.org/wiki/Codefest_2012 Codefest 2012] | ||
+ | | Brad Chapman | ||
|- | |- | ||
− | | | + | | 2:45 |
− | | [Genome-scale] Khmer: A probabilistic approach for efficient counting of k-mers | + | | [Genome-scale] [http://www.slideshare.net/jandot/zhang-q-a-probabilistic-approach-to-kmer-counting Khmer: A probabilistic approach for efficient counting of k-mers] |
| Qingpeng Zhang | | Qingpeng Zhang | ||
|- | |- | ||
− | | | + | | 3:00 |
− | | [Genome-scale] AmiGO 2: a document-oriented approach to ontology software and escaping the heartache of an SQL backend | + | | [Genome-scale] [http://www.slideshare.net/jandot/s-carbon AmiGO 2: a document-oriented approach to ontology software and escaping the heartache of an SQL backend] |
| Seth Carbon | | Seth Carbon | ||
|- | |- | ||
− | | 15 | + | | 3:15 |
− | | [Genome-scale] Discovery of motif-based regulatory signatures in whole genome methylation experiments | + | | [Genome-scale] [http://www.slideshare.net/jandot/j-lichtenberg-discovery-of-motifbased-regulatory-signatures-in-nextgen-sequencing-experiments Discovery of motif-based regulatory signatures in whole genome methylation experiments] |
| Jens Lichtenberg | | Jens Lichtenberg | ||
|- | |- | ||
Line 91: | Line 100: | ||
| Chair: Jan Aerts | | Chair: Jan Aerts | ||
|- | |- | ||
− | || | + | || 4:00 |
− | | [Linked / Translational] The open source ISA metadata tracking framework: from data curation and management at the source, to the linked data universe | + | | [Linked / Translational] [http://www.slideshare.net/jandot/p-roccaserra-the-open-source-isa-metadata-tracking-framework-from-data-curation-and-management-at-the-source-to-the-linked-data-universe The open source ISA metadata tracking framework: from data curation and management at the source, to the linked data universe] |
| Philippe Rocca-Serra | | Philippe Rocca-Serra | ||
|- | |- | ||
− | | 25 | + | | 4:25 |
− | | [Linked / Translational] Automated infrastructure for custom variant comparison and analysis | + | | [Linked / Translational] [http://www.slideshare.net/jandot/b-chapman-toolkit-for-variation-comparison-and-analysis Automated infrastructure for custom variant comparison and analysis] |
| Brad Chapman | | Brad Chapman | ||
|- | |- | ||
− | | | + | | 4:50 |
− | | [Linked / Translational] KUPKB: Sharing, Connecting and Exposing Kidney and Urinary Knowledge using RDF and OWL | + | | [Linked / Translational] [http://www.slideshare.net/jandot/j-klein-kupkb-sharing-connecting-and-exposing-kidney-and-urinary-knowledge-using-rdf-and-owl KUPKB: Sharing, Connecting and Exposing Kidney and Urinary Knowledge using RDF and OWL] |
| Julie Klein | | Julie Klein | ||
|- | |- | ||
− | | | + | | 5:05 |
− | | [Linked / Translational] eagle-i: development and expansion of a scientific resource discovery network | + | | [Linked / Translational] [http://www.slideshare.net/jandot/s-cheng-eaglei-development-and-expansion-of-a-scientific-resource-discovery-network eagle-i: development and expansion of a scientific resource discovery network] |
| Sophia Cheng | | Sophia Cheng | ||
|- | |- | ||
− | | 5:20 | + | | 5:20 |
− | | Introduction to the Open Bioinformatics Foundation | + | | Introduction to the [http://www.open-bio.org/wiki/Main_Page Open Bioinformatics Foundation] |
| Hilmar Lapp (President, Open Bioinformatics Foundation) | | Hilmar Lapp (President, Open Bioinformatics Foundation) | ||
+ | |- | ||
+ | | 5:30 | ||
+ | | Announcements | ||
+ | | Nomi Harris (Chair, BOSC 2012) | ||
|- | |- | ||
| 5:30-6:30 | | 5:30-6:30 | ||
− | | '''Poster Session II''' ( | + | |'''Poster Session II''' (Hall B)--there are still spots open for last-minute posters! |
| | | | ||
|- | |- | ||
Line 120: | Line 133: | ||
|- | |- | ||
| 7:00 | | 7:00 | ||
− | | Pay-your-own-way | + | | Pay-your-own-way BOSC dinner ($25/person): George’s Greek Café, [http://maps.google.com/maps?q=George%27s+Greek+Cafe,+135+Pine+Avenue,+Long+Beach,+CA&hl=en&ll=33.767892,-118.188&spn=0.005699,0.011362&sll=37.887965,-122.267949&sspn=0.016173,0.027766&hq=George%27s+Greek+Cafe,&hnear=135+Pine+Ave,+Long+Beach,+California+90802&t=m&z=17 135 Pine Avenue, Long Beach]. (Registration for dinner is now closed.) |
| | | | ||
|- | |- | ||
|} | |} | ||
− | == Day 2: Saturday, July 14 | + | <br> |
+ | [[File:Pear.png|100px|right|BOSC logo|link=BOSC_2012]] | ||
+ | |||
+ | = Day 2: Saturday, July 14 = | ||
− | {| border="1" cellspacing="0" cellpadding=" | + | {| border="1" cellspacing="0" cellpadding="7" |
! Time | ! Time | ||
! Topic | ! Topic | ||
Line 137: | Line 153: | ||
|- | |- | ||
| 8:50-9:50 | | 8:50-9:50 | ||
− | | [Keynote] | + | | [Keynote] [http://www.slideshare.net/carolegoble/bosc2012-goble If I Build It Will They Come?] |
| Carole Goble (University of Manchester) | | Carole Goble (University of Manchester) | ||
+ | |- | ||
+ | | 9:50-10:15 | ||
+ | | [Misc.] [http://www.slideshare.net/jandot/holland-r-pistoia-alliance-sequence-squeeze Pistoia Alliance Sequence Squeeze: Using a competition model to spur development of novel open-source algorithms] | ||
+ | | Richard Holland | ||
|- | |- | ||
| '''10:15-10:45''' | | '''10:15-10:45''' | ||
Line 146: | Line 166: | ||
| 10:45-12:30 | | 10:45-12:30 | ||
| Session: Software Interoperability | | Session: Software Interoperability | ||
− | | Chair: | + | | Chair: Hilmar Lapp |
|- | |- | ||
− | | | + | | 10:45-11:00 |
− | | [Interoperability] | + | | [Interoperability] [http://www.slideshare.net/jandot/m-reich-genomespace GenomeSpace: An open source environment for frictionless bioinformatics] |
− | | Michael Reich | + | | Michael Reich |
|- | |- | ||
− | | 15 | + | | 11:00-11:15 |
− | | [Interoperability] Galaxy Project Update | + | | [Interoperability] [http://www.slideshare.net/jandot/d-baker-galaxy-update Galaxy Project Update] |
| Dannon Baker | | Dannon Baker | ||
|- | |- | ||
− | | 15 | + | | 11:15-11:30 |
− | | [Interoperability] Zero to a Bioinformatics Analysis Platform in 4 Minutes | + | | [Interoperability] [http://www.slideshare.net/jandot/e-afgan-zero-to-a-bioinformatics-analysis-platform-in-four-minutes Zero to a Bioinformatics Analysis Platform in 4 Minutes] |
| Enis Afgan | | Enis Afgan | ||
|- | |- | ||
− | | | + | | 11:30-11:55 |
− | | [Interoperability] PyPedia: A python crowdsourcing development environment for bioinformatics and computational biology | + | | [Interoperability] [http://www.slideshare.net/jandot/a-kanterakis-pypedia-a-python-crowdsourcing-development-environment-for-bioinformatics-and-computational-biology PyPedia: A python crowdsourcing development environment for bioinformatics and computational biology] |
| Alexandros Kanterakis | | Alexandros Kanterakis | ||
|- | |- | ||
− | | | + | | 11:55-12:10 |
− | | [Interoperability] InterMine - Embeddable Data-Mining Components | + | | [Interoperability] [http://www.slideshare.net/jandot/a-kalderimis-intermine-embeddable-datamining-components InterMine - Embeddable Data-Mining Components] |
| Alexis Kalderimis | | Alexis Kalderimis | ||
|- | |- | ||
− | | | + | | 12:10-12:25 |
− | | [Interoperability] Creating biology pipelines with BioUno | + | | [Interoperability] [http://slidesha.re/MHApSM Creating biology pipelines with BioUno] |
| Bruno Kinoshi ta | | Bruno Kinoshi ta | ||
− | |||
− | |||
− | |||
− | |||
|- | |- | ||
| '''12:30-1:30''' | | '''12:30-1:30''' | ||
Line 181: | Line 197: | ||
|- | |- | ||
| 12:30-1:45 | | 12:30-1:45 | ||
− | | '''Poster Session III''' | + | | '''Poster Session III''' |
| | | | ||
|- | |- | ||
| 1:45-3:30 | | 1:45-3:30 | ||
| Session: Bioinformatics Open Source Project Updates | | Session: Bioinformatics Open Source Project Updates | ||
− | | Chair: | + | | Chair: Jeremy Goecks |
|- | |- | ||
− | | | + | | 1:45-2:00 |
− | | [Project Updates] Mobyle Web Framework: New Features | + | | [Project Updates] [http://www.slideshare.net/jandot/menager-h-mobyle-web-framework-new-features Mobyle Web Framework: New Features] |
| Hervé Ménager | | Hervé Ménager | ||
|- | |- | ||
− | | 15 | + | | 2:00-2:15 |
− | | [Project Updates] Biopython Project Update | + | | [Project Updates] [http://www.slideshare.net/jandot/e-talevich-biopython-projectupdate Biopython Project Update 2012] |
| Eric Talevich | | Eric Talevich | ||
|- | |- | ||
− | | | + | | 2:15-2:40 |
− | | [Project Updates] Biogem,Ruby UCSC API, and BioRuby | + | | [Project Updates] [http://www.slideshare.net/jandot/h-mishima-biogem-ruby-ucsc-api-and-bioruby Biogem,Ruby UCSC API, and BioRuby] |
| Hiroyuki Mishima | | Hiroyuki Mishima | ||
|- | |- | ||
− | | | + | | 2:40-2:55 |
− | | [ | + | | [Project Updates] [http://www.slideshare.net/jandot/j-goecks-the-galaxy-visual-analysis-framework A Framework for Interactive Visual Analysis of NGS Data using Galaxy] |
− | | | + | | Jeremy Goecks |
|- | |- | ||
− | | | + | | 2:55-3:10 |
− | | [Project Updates] Why Scientists Should Contribute to Wikipedia | + | | [Project Updates] [http://www.slideshare.net/jandot/s-bliven-why-scientists-should-contribute-to-wikipedia Why Scientists Should Contribute to Wikipedia] |
| Spencer Bliven | | Spencer Bliven | ||
+ | |- | ||
+ | | 3:10-3:25 | ||
+ | | [Project Updates] [http://www.slideshare.net/jandot/m-gumbel-scabio-a-framework-for-bioinformatics-algorithms-in-scala scabio - a framework for bioinformatics algorithms in Scala] | ||
+ | | Markus Gumbel | ||
|- | |- | ||
| '''3:30-4:00''' | | '''3:30-4:00''' | ||
Line 215: | Line 235: | ||
| Session: Lightning Talks | | Session: Lightning Talks | ||
| Chair: Kam Dahlquist | | Chair: Kam Dahlquist | ||
+ | |- | ||
+ | | 4:00-4:07 | ||
+ | | [Lightning] [http://www.slideshare.net/jandot/j-wang-biokepler-a-comprehensive-bioinformatics-scientific-workflow-module-for-distributed-analysis-of-largescale-biological-data bioKepler: A Comprehensive Bioinformatics Scientific Workflow Module for Distributed Analysis of Large-Scale Biological Data] | ||
+ | | Jianwu Wang | ||
+ | |- | ||
+ | | 4:07-4:14 | ||
+ | | [Lightning] [http://www.slideshare.net/jandot/l-fu-dao-a-novel-programming-language-for-bioinformatics Dao: a novel programming language for bioinformatics] | ||
+ | | Limin Fu | ||
+ | |- | ||
+ | | 4:14-4:21 | ||
+ | | [Lightning] [http://www.slideshare.net/jandot/s-cain-gmod-in-the-cloud-13656789 GMOD in the Cloud] | ||
+ | | Scott Cain | ||
+ | |- | ||
+ | | 4:21-4:28 | ||
+ | | [Lightning] [http://www.slideshare.net/jandot/b-temperton-the-bioinformatics-testing-consortium Bioinformatics Testing Consortium: Codebase peer-review to improve robustness of bioinformatic pipelines] | ||
+ | | Ben Temperton | ||
|- | |- | ||
| 4:30-5:30 | | 4:30-5:30 | ||
| '''Panel''': Bioinformatics Paper Reviews: Openness of Standards and Standards of Openness | | '''Panel''': Bioinformatics Paper Reviews: Openness of Standards and Standards of Openness | ||
| Moderator: Brad Chapman | | Moderator: Brad Chapman | ||
− | Panelists: | + | Panelists: C. Titus Brown, Iain Hrynaszkiewicz, Hilmar Lapp, Scott Markel, Ben Temperton |
− | Hilmar Lapp | ||
|- | |- | ||
| 5:30-5:40 | | 5:30-5:40 | ||
Line 226: | Line 261: | ||
| Nomi Harris | | Nomi Harris | ||
|- | |- | ||
− | | 5:40-6: | + | | 5:40-6:40 |
| [[BOSC_2012/BOFs|BOFs]] | | [[BOSC_2012/BOFs|BOFs]] | ||
| | | | ||
|- | |- | ||
|} | |} | ||
+ | |||
+ | |||
+ | '''[[Media:BOSC2012_schedule.pdf | Click here to download this schedule as PDF]]''' | ||
+ | |||
+ | '''[http://www.open-bio.org/bosc2012/BOSC2012-program.pdf Click here to download the complete BOSC program as PDF]''' | ||
+ | |||
+ | ---- | ||
== Return to '''[[BOSC_2012 | BOSC 2012]]''' main page == | == Return to '''[[BOSC_2012 | BOSC 2012]]''' main page == |
Latest revision as of 20:17, 10 September 2013
Click here to download this schedule as PDF
Day 1: Friday, July 13
Time | Topic | Speaker or Moderator |
---|---|---|
7:30-9:00 | Registration (Early arrival is recommended as there are usually long lines) | Registration |
9:00-9:15 | Introduction and welcome | Nomi Harris (Chair, BOSC 2012) |
9:15-10:15 | [Keynote] Science Wants to Be Open - If Only We Could Get Out of Its Way ** Talk ** | Jonathan Eisen (University of California, Davis) |
10:15-10:45 | Coffee Break | |
10:45-12:30 | Session: Cloud and Parallel Computing | Chair: Richard Holland |
10:45 | [Cloud] Cloudgene - an execution platform for MapReduce programs in public and private clouds | Sebastian Schönherr |
11:10 | [Cloud] Data reduction and division approaches for assembling short-read data in the cloud | C. Titus Brown |
11:35 | [Cloud] MGTAXA - a toolkit and a Web server for predicting taxonomy of the metagenomic sequences with Galaxy front-end and parallel computational back-end | Andrey Tovchigrechko |
12:00 | [Cloud] Workflows on the Cloud - Scaling for National Service | Katy Wolstencroft |
12:15 | [Cloud] How to use BioJava to calculate one billion protein structure alignments at the RCSB PDB website | Andreas Prlic |
12:30-1:30 | Lunch | |
12:30-2:00 | Poster Session I | |
2:00-3:30 | Session: Genome-scale Data Management | Chair: Ronald Taylor |
2:00 | [Genome-scale] Using HDF5 to Work With Large Quantities of Biological Data | Dana Robinson |
2:15 | [Genome-scale] Large scale data management in Chipster 2 workflow environment | Aleksi Kallio |
2:30 | [Genome-scale] JBrowse 2012 | (Ian Holmes is sick--instead we will see a short talk on JBrowse by Robert Buels) |
2:38 | Report on Codefest 2012 | Brad Chapman |
2:45 | [Genome-scale] Khmer: A probabilistic approach for efficient counting of k-mers | Qingpeng Zhang |
3:00 | [Genome-scale] AmiGO 2: a document-oriented approach to ontology software and escaping the heartache of an SQL backend | Seth Carbon |
3:15 | [Genome-scale] Discovery of motif-based regulatory signatures in whole genome methylation experiments | Jens Lichtenberg |
3:30-4:00 | Coffee Break | |
4:00-5:20 | Session: Linked Data and Translational Knowledge Discovery | Chair: Jan Aerts |
4:00 | [Linked / Translational] The open source ISA metadata tracking framework: from data curation and management at the source, to the linked data universe | Philippe Rocca-Serra |
4:25 | [Linked / Translational] Automated infrastructure for custom variant comparison and analysis | Brad Chapman |
4:50 | [Linked / Translational] KUPKB: Sharing, Connecting and Exposing Kidney and Urinary Knowledge using RDF and OWL | Julie Klein |
5:05 | [Linked / Translational] eagle-i: development and expansion of a scientific resource discovery network | Sophia Cheng |
5:20 | Introduction to the Open Bioinformatics Foundation | Hilmar Lapp (President, Open Bioinformatics Foundation) |
5:30 | Announcements | Nomi Harris (Chair, BOSC 2012) |
5:30-6:30 | Poster Session II (Hall B)--there are still spots open for last-minute posters! | |
5:30-6:30 | BOFs | |
7:00 | Pay-your-own-way BOSC dinner ($25/person): George’s Greek Café, 135 Pine Avenue, Long Beach. (Registration for dinner is now closed.) |
Day 2: Saturday, July 14
Time | Topic | Speaker or Moderator |
---|---|---|
8:45-8:50 | Announcements | Nomi Harris |
8:50-9:50 | [Keynote] If I Build It Will They Come? | Carole Goble (University of Manchester) |
9:50-10:15 | [Misc.] Pistoia Alliance Sequence Squeeze: Using a competition model to spur development of novel open-source algorithms | Richard Holland |
10:15-10:45 | Coffee Break | |
10:45-12:30 | Session: Software Interoperability | Chair: Hilmar Lapp |
10:45-11:00 | [Interoperability] GenomeSpace: An open source environment for frictionless bioinformatics | Michael Reich |
11:00-11:15 | [Interoperability] Galaxy Project Update | Dannon Baker |
11:15-11:30 | [Interoperability] Zero to a Bioinformatics Analysis Platform in 4 Minutes | Enis Afgan |
11:30-11:55 | [Interoperability] PyPedia: A python crowdsourcing development environment for bioinformatics and computational biology | Alexandros Kanterakis |
11:55-12:10 | [Interoperability] InterMine - Embeddable Data-Mining Components | Alexis Kalderimis |
12:10-12:25 | [Interoperability] Creating biology pipelines with BioUno | Bruno Kinoshi ta |
12:30-1:30 | Lunch | |
12:30-1:45 | Poster Session III | |
1:45-3:30 | Session: Bioinformatics Open Source Project Updates | Chair: Jeremy Goecks |
1:45-2:00 | [Project Updates] Mobyle Web Framework: New Features | Hervé Ménager |
2:00-2:15 | [Project Updates] Biopython Project Update 2012 | Eric Talevich |
2:15-2:40 | [Project Updates] Biogem,Ruby UCSC API, and BioRuby | Hiroyuki Mishima |
2:40-2:55 | [Project Updates] A Framework for Interactive Visual Analysis of NGS Data using Galaxy | Jeremy Goecks |
2:55-3:10 | [Project Updates] Why Scientists Should Contribute to Wikipedia | Spencer Bliven |
3:10-3:25 | [Project Updates] scabio - a framework for bioinformatics algorithms in Scala | Markus Gumbel |
3:30-4:00 | Coffee Break | |
4:00-4:30 | Session: Lightning Talks | Chair: Kam Dahlquist |
4:00-4:07 | [Lightning] bioKepler: A Comprehensive Bioinformatics Scientific Workflow Module for Distributed Analysis of Large-Scale Biological Data | Jianwu Wang |
4:07-4:14 | [Lightning] Dao: a novel programming language for bioinformatics | Limin Fu |
4:14-4:21 | [Lightning] GMOD in the Cloud | Scott Cain |
4:21-4:28 | [Lightning] Bioinformatics Testing Consortium: Codebase peer-review to improve robustness of bioinformatic pipelines | Ben Temperton |
4:30-5:30 | Panel: Bioinformatics Paper Reviews: Openness of Standards and Standards of Openness | Moderator: Brad Chapman
Panelists: C. Titus Brown, Iain Hrynaszkiewicz, Hilmar Lapp, Scott Markel, Ben Temperton |
5:30-5:40 | Presentation of awards | Nomi Harris |
5:40-6:40 | BOFs |
Click here to download this schedule as PDF
Click here to download the complete BOSC program as PDF