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| − | '''NOTE: Schedule is preliminary--subject to change.'''
| + | [[http://open-bio.org/wiki/BOSC_2011_Schedule]] |
| − | | |
| − | == Day 1: Friday, July 15 (Austria Center Vienna, Room TBA) ==
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| − | | |
| − | {| border="1" cellspacing="0" cellpadding="10"
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| − | ! Time
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| − | ! Topic
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| − | ! Speaker or Moderator
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| − | |-
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| − | | 7:30-9:00
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| − | | Pick up badges for BOSC 2011, Austria Center Vienna
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| − | (Early arrival is recommended as there are usually long lines)
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| − | | '''Registration'''
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| − | |-
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| − | | 9:00-9:15
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| − | | Introduction and welcome
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| − | | Nomi Harris (Co-Chair, BOSC)
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| − | |-
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| − | | 9:15-10:15
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| − | | [Keynote] The role of openness in knowledge-based systems for biomedicine
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| − | | Lawrence Hunter (University of Colorado)
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| − | |-
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| − | | '''10:15-10:45'''
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| − | | '''Coffee Break'''
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| − | |
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| − | |-
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| − | | 10:45-11:05
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| − | |[Genome content management] Unipro UGENE: an open source toolkit for complex genome analysis
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| − | | Konstantin Okonechnikov
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| − | |-
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| − | | 11:05-11:25
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| − | |[Genome content management] Exploring the genome with Dalliance
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| − | | Thomas Down
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| − | |-
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| − | | 11:25-11:45
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| − | |[Genome content management] InterMine - Using RESTful Webservices for Interoperability
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| − | | Alex Kalderimis
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| − | |-
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| − | | 11:45-11:55
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| − | |[Genome content management] easyDAS: Automatic creation of DAS servers
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| − | | Bernat Gel
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| − | |-
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| − | | 11:55-12:05
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| − | |[Genome content management] Enacting Taverna Workflows through Galaxy
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| − | | Marco Roos
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| − | |-
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| − | | 12:05-12:15
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| − | |[Genome content management] Mobyle 1.0: new features, new types of services
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| − | | Hervé Ménager
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| − | |-
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| − | | 12:15-12:25
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| − | |[Genome content management] BioMart 0.8 offers new tools, more interfaces, and increased flexibility through plug-ins
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| − | | Junjun Zhang
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| − | |-
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| − | | 12:25-12:32
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| − | |[Genome content management] Running Workflows Through Taverna Server [lightning]
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| − | | Donal Fellows
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| − | |-
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| − | | '''12:30-2:00'''
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| − | | '''Lunch'''
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| − | |
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| − | |-
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| − | | 1:30-2:30
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| − | | Poster Session I
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| − | |
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| − | |-
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| − | | 2:30-2:50
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| − | |[Visualization] Cytoscape 3.0: Architecture for Extension
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| − | | Michael Smoot
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| − | |-
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| − | | 2:50-3:10
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| − | | [Visualization] Applying Visual Analytics to Extend the Genome Browser from Visualization Tool to Analysis Tool
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| − | | Jeremy Goecks
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| − | |-
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| − | | 3:10-3:20
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| − | | [Visualization] WebApollo: A web-based sequence annotation editor for community annotation
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| − | | Nomi Harris
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| − | |-
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| − | | 3:20-3:30
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| − | | [Visualization] The isobar R package: Analysis of quantitative proteomics data
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| − | | Florian Breitwieser
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| − | |-
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| − | | '''3:30-4:00'''
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| − | | '''Coffee Break'''
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| − | |
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| − | |-
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| − | | 4:00-4:20
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| − | | [Next-generation Sequencing] Stacks: building and genotyping loci de novo from short-read sequences
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| − | | Julian Catchen
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| − | |-
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| − | | 4:20-4:40
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| − | | [Next-generation Sequencing] Large scale NGS pipelines using the MOLGENIS platform: processing the Genome of the Netherlands
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| − | | Morris Swertz
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| − | |-
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| − | | 4:40-4:50
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| − | | [Next-generation Sequencing] Bio-NGS: BioRuby plugin to conduct programmable workflows for Next Generation Sequencing data
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| − | | Raoul Bonnal
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| − | |-
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| − | | 4:50-5:00
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| − | | [Next-generation Sequencing] Goby framework: native support in GSNAP, BWA and IGV 2.0
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| − | | Fabien Campagne
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| − | |-
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| − | | 5:00-5:10
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| − | | [Parallel processing] A Scalable Multicore Implementation of the TEIRESIAS Algorithm
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| − | | Frank Drews
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| − | |-
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| − | | 5:10-5:20
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| − | | [Parallel processing] Biomanycores, open-source parallel code for many-core bioinformatics
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| − | | Mathieu Giraud
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| − | |-
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| − | | 5:20-5:30
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| − | | [Next-generation Sequencing] GemSIM: General, Error-Model Based Simulator of next-generation sequencing
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| − | | Kerensa McElroy
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| − | |-
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| − | | 5:30-6:30
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| − | | Poster Session II
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| − | |
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| − | |-
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| − | | 5:30-6:30
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| − | | BOFs
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| − | |
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| − | |-
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| − | | 7:00
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| − | | Pay-your-own-way optional dinner at a nearby restaurant
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| − | |
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| − | |-
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| − | |}
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| − | | |
| − | == Day 2: Saturday, July 16 (Austria Center Vienna, Room TBA) ==
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| − | | |
| − | {| border="1" cellspacing="0" cellpadding="10"
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| − | ! Time
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| − | ! Topic
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| − | ! Speaker or Moderator
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| − | |-
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| − | | 8:45-8:50
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| − | | Announcements
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| − | |
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| − | |-
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| − | | 8:50-9:50
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| − | | [Keynote] Into the Wonderful
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| − | | Matt Wood (Amazon)
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| − | |-
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| − | | 9:50-10:15
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| − | | [Cloud computing] Securing and sharing bioinformatics in the cloud
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| − | | Richard Holland (Eagle Genomics)
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| − | |-
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| − | | '''10:15-10:45'''
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| − | | '''Coffee Break'''
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| − | |
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| − | |-
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| − | | 10:45-11:05
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| − | |[Cloud computing] Mygene.info: Gene Annotation as a Service - GAaaS
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| − | | Chunlei Wu
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| − | |-
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| − | | 11:05-11:25
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| − | |[Cloud computing] Cloud BioLinux: open source, fully-customizable bioinformatics computing on the cloud for the genomics
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| − | community and beyond
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| − | | Konstantinos Krampis
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| − | |-
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| − | | 11:25-11:35
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| − | |[Cloud computing] OBIWEE : an open source bioinformatics cloud environment
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| − | | Jonathan Piat
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| − | |-
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| − | | 11:35-11:45
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| − | |[Cloud computing] SeqWare: Analyzing Whole Human Genome Sequence Data on Amazon's Cloud
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| − | | Brian O'Connor
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| − | |-
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| − | | 11:45-12:05
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| − | |[Cloud computing] Sequencescape - a cloud enabled Laboratory Information Management Systems (LIMS) for second and
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| − | third generation sequencing
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| − | | Lars Jorgensen
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| − | |-
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| − | | 12:05-12:15
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| − | |[Cloud computing] Enabling NGS Analysis with(out) the Infrastructure
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| − | | Enis Afgan
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| − | |-
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| − | | 12:15-12:25
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| − | |[Cloud computing] Hadoop-BAM: A Library for Genomic Data Processing
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| − | | Aleksi Kallio
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| − | |-
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| − | | '''12:30-2:00'''
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| − | | '''Lunch'''
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| − | |
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| − | |-
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| − | | 1:00-2:00
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| − | | Poster Session III
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| − | |
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| − | |-
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| − | | 2:00-2:10
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| − | |[Semantic Web] SADI for GMOD: Bringing Model Organism Data onto the Semantic Web
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| − | | Ben Vandervalk
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| − | |-
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| − | | 2:10-2:20
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| − | |[Semantic Web] Scufl2: because a workflow is more than its definition
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| − | | Stian Soiland-Reyes
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| − | |-
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| − | | 2:20-2:30
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| − | |[Semantic Web] OntoCAT - an integrated programming toolkit for common ontology application tasks
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| − | | Tomasz Adamusiak
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| − | |-
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| − | | 2:30-2:50
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| − | |[Misc.] Debian Med: individuals' expertize and their sharing of package build instructions
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| − | | Steffen Möller
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| − | |-
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| − | | 2:50-3:10
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| − | |[Misc.] The BALL project: The Biochemical Algorithms Library (BALL) for Rapid Application Development in Structural Bioinformatics
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| − | and its graphical user interface BALLView
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| − | | Andreas Hildebrandt
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| − | |-
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| − | | 3:10-3:20
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| − | |[Misc.] Biopython Project Update
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| − | | Peter Cock
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| − | |-
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| − | | 3:20-3:27
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| − | |[Misc.] What's new with GMOD [lightning]
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| − | | Scott Cain
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| − | |-
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| − | | 3:27-3:34
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| − | | Exploring human variation data with Clojure [lightning]
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| − | | Brad Chapman
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| − | |-
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| − | | '''3:30-4:00'''
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| − | | '''Coffee Break'''
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| − | |
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| − | |-
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| − | | 4:00-4:10
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| − | |[Misc.] EMBOSS: New developments and extended data access
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| − | | Peter Rice
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| − | |-
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| − | | 4:10-4:20
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| − | |[Misc.] G-language Project: the last 10 years and beyond
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| − | | Kazuharu Arakawa
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| − | |-
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| − | | 4:20-4:30
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| − | |[Misc.] A Framework for Bioinformatics on the Microsoft Platform
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| − | | Simon Mercer
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| − | |-
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| − | | 4:30-5:20
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| − | | Panel: Meeting the challenges of inter-institutional collaboration
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| − | | Panelists: Richard Holland (Eagle Genomics),
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| − | Hilmar Lapp (National Evolutionary Synthesis Center),
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| − | | |
| − | Jean Peccoud (Virginia Bioinformatics Institute),
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| − | | |
| − | Peter Rice (European Bioinformatics Institute)
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| − | |-
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| − | | 5:20-5:30
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| − | | Presentation of awards
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| − | | Nomi Harris
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| − | |-
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| − | | 5:30-6:30
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| − | | BOFs
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| − | |
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| − | |-
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| − | |}
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| − | | |
| − | | |
| − | '''NOTE: Schedule is preliminary--subject to change.'''
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| | | | |
| | == Return to '''[[BOSC_2011 | BOSC 2011]]''' main page == | | == Return to '''[[BOSC_2011 | BOSC 2011]]''' main page == |
