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BOSC 2014 Schedule

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Revision as of 19:38, 9 June 2014 by Peter (talk) (Talk times)
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This year we have allocated all the talks an equal slot, 15 minutes plus 3 minutes for questions (making 18 minutes), except for the project update session where this is reduced to 10 minutes plus 2 minutes for questions (making 12 minutes in all). Lightning talks are 5 minutes only (no questions), and are intended for a brief introduction with the expectation that interested people will talk in the evening or next day.

Pre-BOSC Codefest: July 9-10, 2014

See Codefest 2014 for details.

BOSC Day 1: Friday, 11 July 2014

Time Topic Speaker, Moderator, or notes
7:30-9:00 Registration Early arrival is recommended as there are usually long lines
9:00-9:15 Introduction and welcome Nomi Harris and/or Peter Cock (Chairs, BOSC 2014)
9:15-10:15 Keynote: A History of Bioinformatics (in the year 2039) C. Titus Brown
10:15-10:45 Coffee Break
10:45-12:30 Session: Genome-scale Data and Beyond Chair: Chris Fields
10:45-11:03 [Genome-Scale] ADAM: Fast, Scalable Genomic Analysis Frank Austin Nothaft
11:03-11:21 [Genome-Scale] A framework for benchmarking RNA-seq pipelines Rory Kirchner
11:21-11:39 [Genome-Scale] New Frontiers of Genome Assembly with SPAdes 3.1 Andrey Prjibelski
11:39-11:57 [Genome-Scale] SigSeeker: An Ensemble for Analysis of Epigenetic Data Jens Lichtenberg
11:57-12:15 [Genome-Scale] Galaxy as an Extensible Job Execution Platform John Chilton
12:15-12:30 Open Bioinformatics Foundation (OBF) Update Hilmar Lapp (OBF President)
12:30-13:30 Lunch (and poster session)
13:00-14:00 Poster Session and Birds of a Feather (overlapping with lunch) Suggest a BOF topic here!
14:00-15:30 Session: Visualization Chair: Rob Davey
14:00-14:18 [Visualization] WormGUIDES: an Interactive Informatic Developmental Atlas at Subcellular Resolution Anthony Santella
14:18-14:36 [Visualization] BioJS: an open source standard for biological visualisation Manuel Corpas
14:36-14:54 [Visualization] Biodalliance: a fast, extensible genome browser Thomas Down
14:54-15:12 [Visualization] TGAC Browser: visualisation solutions for big data in the genomic era Anil S. Thanki
15:12-15:30 [Visualization] Explore, analyze, and share genomic data using Integrated Genome Browser Ann Loraine
15:30-16:00 Coffee Break
16:00-17:00 Session: Bioinformatics Open Source Project Updates Chair: Peter Cock
16:00-16:12 [Updates] BioMart 0.9 – introducing tools for data analysis and visualisation Luca Pandini
16:12-16:24 [Updates] Biocaml: The OCaml Bioinformatics Library Ashish Agarwal
16:24-16:36 [Updates] BioRuby and distributed development Pjotr Prins
16:36-16:48 [Updates] Biopython Project Update Wibowo Arindrarto
16:48-17:00 [Updates] Shared bioinformatics database within Unipro UGENE Ivan Protsyuk
17:00-18:00 Lightning Talks followed by BOFs Suggest a BOF topic here!
19:00 Pay-your-own-way BOSC dinner


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BOSC Day 2: Saturday, 12 July 2014

Time Topic Speaker or Moderator
8:45-8:50 Announcements Peter Cock and/or Nomi Harris (Chairs, BOSC 2014)
8:50-9:00 Codefest 2014 Report Brad Chapman
9:00-9:15 Open Bioinformatics Foundation (OBF) update Hilmar Lapp (President, Open Bioinformatics Foundation)
9:15-10:15 Keynote: Biomedical Research as an Open Digital Enterprise Philip Bourne
10:15-10:45 Coffee Break
10:45-12:30 Session: Software Interoperability Chair: Raoul Bonnal
10:45-11:03 [Interoperability] Pathview: an R/Bioconductor package for pathway-based data integration and visualization Weijun Luo
11:03-11:21 [Interoperability] Use of semantically annotated resources in the Mobyle2 Web Framework Hervé Ménager
11:21-11:39 [Interoperability] Towards ubiquitous OWL computing: Simplifying programmatic authoring of and querying with OWL axioms Hilmar Lapp
11:39-11:57 [Interoperability] The coming of the age of the platform for bioinformatics? (And how to keep it open-source) Konstantinos Krampis
11:57-12:15 [Interoperability] Integrating Taverna Player into Scratchpads Robert Haines
12:15-12:33 [Interoperability] Small tools for Bioinformatics Pjotr Prins
12:30-13:30 Lunch (and poster session)
13:00-14:00 Poster Session and Birds of a Feather (overlapping with lunch) Suggest a BOF topic here!
14:00-15:30 Session: Open Science and Reproducible Research Chair: Hilmar Lapp
14:00-14:18 [Open Science] SEEK for Science: A Data Management Platform which Supports Open and Reproducible Science Stuart Owen
14:18-14:36 [Open Science] Arvados: Achieving Computational Reproducibility and Data Provenance in Large-Scale Genomic Analyses Brett Smith
14:36-14:54 [Open Science] Enhancing the Galaxy Experience through Community Involvement Daniel Blankenberg
14:54-15:12 [Open Science] Supporting dynamic community developed biological pipelines Brad Chapman
15:12-15:30 [Open Science] Open as a strategy for durability, reproducibility and scalability Jonathan Rees
15:30-16:00 Coffee Break
16:00-17:00 Panel: Reproducibility: Rewards and Challenges Moderator: Brad Chapman;

Panelists: Phil Bourne, Titus Brown, Varsha Khodiyar, Kay Thaney

17:00-17:10 Presentation of Student Travel Awards & Concluding Remarks Nomi Harris (Co-Chair, BOSC 2014)
17:10-18:00 BOFs Suggest a BOF topic here!

Note the ISMB reception starts at 17:30...


Posters

Shared links to presented posters will be posted here:

Title Presenter
...



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