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Difference between revisions of "BOSC 2011 Detailed Schedule"

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m (Day 1: Friday, July 15 (Austria Center Vienna, Room TBA))
(Replaced content with 'http://open-bio.org/wiki/BOSC_2011_Schedule == Return to ''' BOSC 2011''' main page == Category:BOSC Category:Conferences [[Category:BOSC Confere…')
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'''NOTE: Schedule is preliminary--subject to change.'''
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[[http://open-bio.org/wiki/BOSC_2011_Schedule]]
 
 
== Day 1: Friday,  July 15  (Austria Center Vienna,  Room TBA) ==
 
 
 
{| border="1" cellspacing="0" cellpadding="10"
 
! Time
 
! Topic
 
! Speaker or Moderator
 
|-
 
| 7:30-9:00
 
| Pick up badges for BOSC 2011, Austria Center Vienna
 
(Early arrival is recommended as there are usually long lines)
 
| '''Registration'''
 
|-
 
| 9:00-9:15
 
| Introduction and welcome
 
| Nomi Harris (Co-Chair, BOSC)
 
|-
 
| 9:15-10:15
 
| [Keynote] The role of openness in knowledge-based systems for biomedicine
 
| Lawrence Hunter (University of Colorado)
 
|-
 
| '''10:15-10:45'''
 
| '''Coffee Break'''
 
|
 
|-
 
| 10:45-11:05
 
|[Genome content management] Unipro UGENE: an open source toolkit for complex genome analysis
 
| Konstantin Okonechnikov
 
|-
 
| 11:05-11:25
 
|[Genome content management] Exploring the genome with Dalliance
 
| Thomas Down
 
|-
 
| 11:25-11:45
 
|[Genome content management] InterMine - Using RESTful Webservices for Interoperability
 
| Alex Kalderimis
 
|-
 
| 11:45-11:55
 
|[Genome content management] easyDAS: Automatic creation of DAS servers
 
| Bernat Gel
 
|-
 
| 11:55-12:05
 
|[Genome content management] Enacting Taverna Workflows through Galaxy
 
| Marco Roos
 
|-
 
| 12:05-12:15
 
|[Genome content management] Mobyle 1.0: new features, new types of services
 
| Hervé Ménager
 
|-
 
| 12:15-12:25
 
|[Genome content management] BioMart 0.8 offers new tools, more interfaces, and increased flexibility through plug-ins
 
| Junjun Zhang
 
|-
 
| 12:25-12:32
 
|[Genome content management] Running Workflows Through Taverna Server [lightning]
 
| Donal Fellows
 
|-
 
| '''12:30-2:00'''
 
| '''Lunch'''
 
|
 
|-
 
| 1:30-2:30
 
| Poster Session I
 
|
 
|-
 
| 2:30-2:50
 
|[Visualization] Cytoscape 3.0: Architecture for Extension
 
| Michael Smoot
 
|-
 
| 2:50-3:10
 
| [Visualization] Applying Visual Analytics to Extend the Genome Browser from Visualization Tool to Analysis Tool
 
| Jeremy Goecks
 
|-
 
| 3:10-3:20
 
| [Visualization] WebApollo: A web-based sequence annotation editor for community annotation
 
| Nomi Harris
 
|-
 
| 3:20-3:30
 
| [Visualization] The isobar R package: Analysis of quantitative proteomics data
 
| Florian Breitwieser
 
|-
 
| '''3:30-4:00'''
 
| '''Coffee Break'''
 
|
 
|-
 
| 4:00-4:20
 
| [Next-generation Sequencing] Stacks: building and genotyping loci de novo from short-read sequences
 
| Julian Catchen
 
|-
 
| 4:20-4:40
 
| [Next-generation Sequencing] Large scale NGS pipelines using the MOLGENIS platform: processing the Genome of the Netherlands
 
| Morris Swertz
 
|-
 
| 4:40-4:50
 
| [Next-generation Sequencing] Bio-NGS: BioRuby plugin to conduct programmable workflows for Next Generation Sequencing data
 
| Raoul Bonnal
 
|-
 
| 4:50-5:00
 
| [Next-generation Sequencing] Goby framework: native support in GSNAP, BWA and IGV 2.0
 
| Fabien Campagne
 
|-
 
| 5:00-5:10
 
| [Parallel processing] A Scalable Multicore Implementation of the TEIRESIAS Algorithm
 
| Frank Drews
 
|-
 
| 5:10-5:20
 
| [Parallel processing] Biomanycores, open-source parallel code for many-core bioinformatics
 
| Mathieu Giraud
 
|-
 
| 5:20-5:30
 
| [Next-generation Sequencing] GemSIM: General, Error-Model Based Simulator of next-generation sequencing
 
| Kerensa McElroy
 
|-
 
| 5:30-6:30
 
| Poster Session II
 
|
 
|-
 
| 5:30-6:30
 
| BOFs
 
|
 
|-
 
| 7:00
 
| Pay-your-own-way optional dinner at a nearby restaurant
 
|
 
|-
 
|}
 
 
 
== Day 2: Saturday, July 16 (Austria Center Vienna, Room TBA) ==
 
 
 
{| border="1" cellspacing="0" cellpadding="10"
 
! Time
 
! Topic
 
! Speaker or Moderator
 
|-
 
| 8:45-8:50
 
| Announcements
 
|
 
|-
 
| 8:50-9:50
 
| [Keynote] Into the Wonderful
 
| Matt Wood (Amazon)
 
|-
 
| 9:50-10:15
 
| [Cloud computing] Securing and sharing bioinformatics in the cloud
 
| Richard Holland (Eagle Genomics)
 
|-
 
| '''10:15-10:45'''
 
| '''Coffee Break'''
 
|
 
|-
 
| 10:45-11:05
 
|[Cloud computing] Mygene.info: Gene Annotation as a Service - GAaaS
 
| Chunlei Wu
 
|-
 
| 11:05-11:25
 
|[Cloud computing] Cloud BioLinux: open source, fully-customizable bioinformatics computing on the cloud for the genomics
 
community and beyond
 
| Konstantinos Krampis
 
|-
 
| 11:25-11:35
 
|[Cloud computing] OBIWEE : an open source bioinformatics cloud environment
 
| Jonathan Piat
 
|-
 
| 11:35-11:45
 
|[Cloud computing] SeqWare: Analyzing Whole Human Genome Sequence Data on Amazon's Cloud
 
| Brian O'Connor
 
|-
 
| 11:45-12:05
 
|[Cloud computing] Sequencescape - a cloud enabled Laboratory Information Management Systems (LIMS) for second and
 
third generation sequencing
 
| Lars Jorgensen
 
|-
 
| 12:05-12:15
 
|[Cloud computing] Enabling NGS Analysis with(out) the Infrastructure
 
| Enis Afgan
 
|-
 
| 12:15-12:25
 
|[Cloud computing] Hadoop-BAM: A Library for Genomic Data Processing
 
| Aleksi Kallio
 
|-
 
| '''12:30-2:00'''
 
| '''Lunch'''
 
|
 
|-
 
| 1:00-2:00
 
| Poster Session III
 
|
 
|-
 
| 2:00-2:10
 
|[Semantic Web] SADI for GMOD: Bringing Model Organism Data onto the Semantic Web
 
| Ben Vandervalk
 
|-
 
| 2:10-2:20
 
|[Semantic Web] Scufl2: because a workflow is more than its definition
 
| Stian Soiland-Reyes
 
|-
 
| 2:20-2:30
 
|[Semantic Web] OntoCAT - an integrated programming toolkit for common ontology application tasks
 
| Tomasz Adamusiak
 
|-
 
| 2:30-2:50
 
|[Misc.] Debian Med: individuals' expertize and their sharing of package build instructions
 
| Steffen Möller
 
|-
 
| 2:50-3:10
 
|[Misc.] The BALL project: The Biochemical Algorithms Library (BALL) for Rapid Application Development in Structural Bioinformatics
 
and its graphical user interface BALLView
 
| Andreas Hildebrandt
 
|-
 
| 3:10-3:20
 
|[Misc.] Biopython Project Update
 
| Peter Cock
 
|-
 
| 3:20-3:27
 
|[Misc.] What's new with GMOD [lightning]
 
| Scott Cain
 
|-
 
| 3:27-3:34
 
| Exploring human variation data with Clojure [lightning]
 
| Brad Chapman
 
|-
 
| '''3:30-4:00'''
 
| '''Coffee Break'''
 
|
 
|-
 
| 4:00-4:10
 
|[Misc.] EMBOSS: New developments and extended data access
 
| Peter Rice
 
|-
 
| 4:10-4:20
 
|[Misc.] G-language Project: the last 10 years and beyond
 
| Kazuharu Arakawa
 
|-
 
| 4:20-4:30
 
|[Misc.] A Framework for Bioinformatics on the Microsoft Platform
 
| Simon Mercer
 
|-
 
| 4:30-5:20
 
| Panel: Meeting the challenges of inter-institutional collaboration
 
| Panelists: Richard Holland (Eagle Genomics),
 
Hilmar Lapp (National Evolutionary Synthesis Center),
 
 
 
Jean Peccoud (Virginia Bioinformatics Institute),
 
 
 
Peter Rice (European Bioinformatics Institute)
 
|-
 
| 5:20-5:30
 
| Presentation of awards
 
| Nomi Harris
 
|-
 
| 5:30-6:30
 
| BOFs
 
|
 
|-
 
|}
 
 
 
 
 
'''NOTE: Schedule is preliminary--subject to change.'''
 
  
 
== Return to '''[[BOSC_2011 | BOSC 2011]]''' main page ==
 
== Return to '''[[BOSC_2011 | BOSC 2011]]''' main page ==

Revision as of 16:48, 30 June 2011

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