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Difference between revisions of "Bio-packaging"
From Open Bioinformatics Foundation
(Created page with "If you are in any way interested in software packaging and deployment for bioinformatics you can meet like-minded people on the Open Bioinformatics Foundation (OBF) bio-packag...") |
(List of packaging systems) |
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Here we discuss issues around packaging and deploying software: anything that concerns dependencies, multiple version support and/or reproducibility. The general idea is to come up with solutions we can share across environments and construct (shared) pipelines out of them. | Here we discuss issues around packaging and deploying software: anything that concerns dependencies, multiple version support and/or reproducibility. The general idea is to come up with solutions we can share across environments and construct (shared) pipelines out of them. | ||
| + | |||
| + | == Generic packaging systems == | ||
| + | |||
| + | === GNU Guix === | ||
| + | |||
| + | == Language based packaging systems == | ||
| + | |||
| + | === Ruby biogems === | ||
| + | === Python packages === | ||
| + | === Perl CPAN === | ||
| + | |||
| + | == Linux distributions and VMs == | ||
| + | |||
| + | === Debian BioMed === | ||
| + | === CloudBiolinux === | ||
| + | === Galaxy === | ||
| + | === Docker === | ||
Revision as of 15:25, 28 May 2015
If you are in any way interested in software packaging and deployment for bioinformatics you can meet like-minded people on the Open Bioinformatics Foundation (OBF) bio-packaging mailing list at
http://lists.open-bio.org/mailman/listinfo/bio-packaging
Here we discuss issues around packaging and deploying software: anything that concerns dependencies, multiple version support and/or reproducibility. The general idea is to come up with solutions we can share across environments and construct (shared) pipelines out of them.
