Difference between revisions of "Projects"

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(added link to the biodas global sequence identifier page)
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==Main projects==
 
==Main projects==
* [http://www.biojava.org BioJava]
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Your recent change was '''NOT''' appreciated. Leave a reason on '''MY''' talk page. [[User:Sysadmin|Sysadmin]] 22:06, 4 June 2006 (UTC)
* [[bp:BioPerl|BioPerl]]
 
* [http://biopipe.org BioPipe]
 
* [http://www.biopython.org BioPython]
 
* [http://www.bioruby.org BioRuby]
 
* [http://www.biodas.org DAS] and their list of [[DAS:GlobalSeqIDs|Global Sequence Identifiers]]
 
* [http://www.biomoby.org MOBY]
 
* [http://www.emboss.org EMBOSS]
 
* [http://obda.open-bio.org OBDA] (this website is out of date, a new one is being developed)
 
 
 
==Affiliated projects==
 
* [http://www.gmod.org/ggb Generic Genome Browser] - part of [http://www.gmod.org GMOD]
 
* [http://www.gmod.org/schema/ Chado] - The GMOD DB schema
 
* [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - a tool to generate Web interfaces software for submitting jobs to these interfaces
 
* [http://industry.ebi.ac.uk/openBQS/ openBQS] - Bibliographic query system
 
* [http://blipkit.org BlipKit] - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
 
* [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles
 
 
 
==Other related projects==
 
* [http://biophp.org BioPHP]
 
* [http://www.yandell-lab.org/cgl/ CGL] - Comparative Genomics Library
 
* [http://wikiomics.org Wikiomics] - Bioinformatics wiki
 
 
 
==Ontologies and Definitions==
 
* [http://search.cpan.org/~cmungall/go-perl GO-Perl] - parsers and object model for OBO ontologies
 
* [http://www.fruitfly.org/chaos-xml/ Chaos-XML] - File format based on the sequence modules of the Chado relational schema
 
* [http://song.sourceforge.net/ Sequence Ontology]
 
* [http://geneontology.org/ Gene Ontology]
 
* [http://www.fruitfly.org/~cjm/obol/ Obol]
 

Revision as of 18:08, 4 June 2006

Main projects

Your recent change was NOT appreciated. Leave a reason on MY talk page. Sysadmin 22:06, 4 June 2006 (UTC)