Difference between revisions of "Projects"

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==Main projects==
 
==Main projects==
'''GET OFF THIS SITE'''
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* [http://www.biojava.org BioJava]
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* [[bp:BioPerl|BioPerl]]
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* [http://biopipe.org BioPipe]
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* [http://www.biopython.org BioPython]
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* [http://www.bioruby.org BioRuby]
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* [http://www.biodas.org DAS] and their list of [[DAS:GlobalSeqIDs|Global Sequence Identifiers]]
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* [http://www.biomoby.org MOBY]
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* [http://www.emboss.org EMBOSS]
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* [http://obda.open-bio.org OBDA] (this website is out of date, a new one is being developed)
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==Affiliated projects==
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* [http://www.gmod.org/ggb Generic Genome Browser] - part of [http://www.gmod.org GMOD]
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* [http://www.gmod.org/schema/ Chado] - The GMOD DB schema
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* [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - a tool to generate Web interfaces software for submitting jobs to these interfaces
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* [http://industry.ebi.ac.uk/openBQS/ openBQS] - Bibliographic query system
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* [http://blipkit.org BlipKit] - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
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* [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles
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==Other related projects==
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* [http://biophp.org BioPHP]
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* [http://www.yandell-lab.org/cgl/ CGL] - Comparative Genomics Library
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* [http://wikiomics.org Wikiomics] - Bioinformatics wiki
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==Ontologies and Definitions==
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* [http://search.cpan.org/~cmungall/go-perl GO-Perl] - parsers and object model for OBO ontologies
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* [http://www.fruitfly.org/chaos-xml/ Chaos-XML] - File format based on the sequence modules of the Chado relational schema
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* [http://song.sourceforge.net/ Sequence Ontology]
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* [http://geneontology.org/ Gene Ontology]
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* [http://www.fruitfly.org/~cjm/obol/ Obol]

Revision as of 13:37, 20 June 2006

Main projects

Affiliated projects

  • Generic Genome Browser - part of GMOD
  • Chado - The GMOD DB schema
  • Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
  • openBQS - Bibliographic query system
  • BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
  • BioMake & Skam - Task management tool, similar to makefiles

Other related projects

Ontologies and Definitions