Difference between revisions of "Projects"

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(Ontologies and Definitions)
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==Ontologies and Definitions==
 
==Ontologies and Definitions==
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* [http://nemo-cyclone.sourceforge.net Cyclone] - provides an open source Java API to the pathway tool BioCyc.
 
* [http://search.cpan.org/~cmungall/go-perl GO-Perl] - parsers and object model for OBO ontologies
 
* [http://search.cpan.org/~cmungall/go-perl GO-Perl] - parsers and object model for OBO ontologies
 
* [http://www.fruitfly.org/chaos-xml/ Chaos-XML] - File format based on the sequence modules of the Chado relational schema
 
* [http://www.fruitfly.org/chaos-xml/ Chaos-XML] - File format based on the sequence modules of the Chado relational schema

Revision as of 06:57, 28 July 2006

Main projects

Affiliated projects

  • Generic Genome Browser - part of GMOD
  • Chado - The GMOD DB schema
  • Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
  • openBQS - Bibliographic query system
  • BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
  • BioMake & Skam - Task management tool, similar to makefiles

Other related projects

Ontologies and Definitions