Difference between revisions of "Projects"

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The O|B|F currently serves as the main host for following projects
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==Main projects==
* [http://www.biojava.org BioJava]
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{{Main projects}}
* [[bp:BioPerl|BioPerl]]
 
* [http://biopipe.org BioPipe]
 
* [http://www.biopython.org BioPython]
 
* [http://www.biodas.org DAS]
 
* [http://www.biomoby.org MOBY]
 
  
We provide code and mailing list hosting for  
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==Affiliated projects==
* [http://www.emboss.org EMBOSS]
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* [http://www.gmod.org/ggb Generic Genome Browser] - part of [http://www.gmod.org GMOD]
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* [http://www.gmod.org/schema/ Chado] - The GMOD DB schema
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==Other related projects==
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* [http://biojs.net/ BioJS] - an open-source library of JavaScript components to visualise biological data
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* BioHaskell [http://biohaskell.org/ home page], [http://hackage.haskell.org/packages/archive/pkg-list.html#cat:bioinformatics releases]
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* [http://biocaml.org Biocaml] - bioinformatics library in the functional programming language OCaml
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* [http://biophp.org BioPHP]
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* [http://biosmalltalk.github.io/web/ BioSmalltalk] - Bioinformatics in a pure objects environment
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* [http://bioweka.sourceforge.net/index.php/Main_Page BioWeka]
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* [http://www.bioclipse.net/ BioClipse] - visual platform based on Eclipse
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* [http://www.yandell-lab.org/cgl/ CGL] - Comparative Genomics Library
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* [http://wikiomics.org Wikiomics] - Bioinformatics wiki
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* [http://www.pasteur.fr/recherche/unites/sis/Pise/ Pise] - a tool to generate Web interfaces software for submitting jobs to these interfaces
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* [http://www.ebi.ac.uk/~senger/openbqs/ OpenBQS] - Bibliographic query system
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* [http://blipkit.org BlipKit] - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
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* [http://skam.sourceforge.net/ BioMake & Skam] - Task management tool, similar to makefiles
  
The following projects are affiliated with O|B|F
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==Ontologies and Definitions==
* [http://www.bioruby.org BioRuby]
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* [http://nemo-cyclone.sourceforge.net Cyclone] - provides an open source Java API to the pathway tool BioCyc.
* [http://www.gmod.org/ggb Generic Genome Browser] - part of [http://www.gmod.org GMOD]
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* [http://search.cpan.org/~cmungall/go-perl GO-Perl] - parsers and object model for OBO ontologies
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* [http://www.fruitfly.org/chaos-xml/ Chaos-XML] - File format based on the sequence modules of the Chado relational schema
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* [http://song.sourceforge.net/ Sequence Ontology]
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* [http://geneontology.org/ Gene Ontology]
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* [http://www.fruitfly.org/~cjm/obol/ Obol]

Latest revision as of 11:44, 19 November 2015

Main projects

Affiliated projects

Other related projects

  • BioJS - an open-source library of JavaScript components to visualise biological data
  • BioHaskell home page, releases
  • Biocaml - bioinformatics library in the functional programming language OCaml
  • BioPHP
  • BioSmalltalk - Bioinformatics in a pure objects environment
  • BioWeka
  • BioClipse - visual platform based on Eclipse
  • CGL - Comparative Genomics Library
  • Wikiomics - Bioinformatics wiki
  • Pise - a tool to generate Web interfaces software for submitting jobs to these interfaces
  • OpenBQS - Bibliographic query system
  • BlipKit - Chris Mungall's Prolog toolkit for Bioinformatics and BioMedical Informatics
  • BioMake & Skam - Task management tool, similar to makefiles

Ontologies and Definitions