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Difference between revisions of "User:Kdahlquist"

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[http://myweb.lmu.edu/kdahlqui/ Kam Dahlquist]
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I am the head of the [http://myweb.lmu.edu/kdahlqui Dahlquist Lab] at [http://www.lmu.edu Loyola Marymount University].
  
==Contact Info==
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== O|B|F Activities ==
  
Kam D. Dahlquist, Ph.D.
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* Presented at [[BOSC 2006]] (Fortaleza) and became a member of the O|B|F.
Assistant Professor
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* Presented at [[BOSC 2007]] (Vienna) and attended the O|B|F Board meeting.
Department of Biology
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* Chair of the Organizing Committee for [[BOSC 2008]] (Toronto).
Loyola Marymount University
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* Chair of the Organizing Committee for [[BOSC 2009]] (Stockholm).
1 LMU Drive, MS8220
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* Chair of the Organizing Committee for [[BOSC 2010]] (Boston) and Editor of the [[BOSC 2010 Proceedings]].
Los Angeles, CA 90045
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* At-large Member of the [[Board | Board of Directors]] for the O|B|F from 19 November 2008 to 5 October 2010.
*[[Special:Emailuser/Kam D. Dahlquist|Email me through OpenWetWare]]
 
  
I am the head of the [http://myweb.lmu.edu/kdahlqui Dahlquist Lab] at [http://www.lmu.edu Loyola Marymount University].  I learned about [[OpenWetWare]] through a Google search when I was searching for a protocol online. I've joined because I run a lab with undergraduates at a primarily undergraduate institution and would like to post my protocols and supply lists online for easy access and to share them with the community.
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==Research Interests==
 
 
==Education==
 
* 2000, PhD, University of California, Santa Cruz
 
* 1993, BA, Pomona College
 
 
 
==Research interests==
 
  
 
# [http://xmlpipedb.cs.lmu.edu XMLPipeDB]:  A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources; creating MAPPs and Gene Databases for the [http://www.GenMAPP.org GenMAPP] software
 
# [http://xmlpipedb.cs.lmu.edu XMLPipeDB]:  A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources; creating MAPPs and Gene Databases for the [http://www.GenMAPP.org GenMAPP] software
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# Identifying Soil Bacteria and Biochemical Pathways in the Ballona Wetlands for the Bioremediation of Organic Pollutants
 
# Identifying Soil Bacteria and Biochemical Pathways in the Ballona Wetlands for the Bioremediation of Organic Pollutants
  
==Publications==
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You can learn more about my research at my [http://myweb.lmu.edu/kdahlqui web page] or my [http://www.openwetware.org/wiki/Dahlquist OpenWetware Site].
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
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<biblio>
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==Teaching Interests==
#Paper1 Dionisio, JDN and Dahlquist, KD ''Improving the Computer Science in Bioinformatics Through Open Source Pedagogy'' SIGCSE Bulletin 2008 Jun; 40(2) 115-9. doi:10.1145/1383602.1383648 [http://portal.acm.org/citation.cfm?id=1383648&jmp=cit&coll=portal&dl=ACM&CFID=74660743&CFTOKEN=75759974# Abstract]
 
#Paper2 pmid=17588266
 
#Paper3 pmid=18428731
 
#Paper4 pmid=14980020
 
#Paper5 pmid=12540299
 
#Paper6 pmid=11984561
 
#Paper7 pmid=10860719
 
#Paper8 pmid=9931247
 
#Paper9 pmid=8893854
 
#Paper10 pmid=8643361
 
</biblio>
 
  
==Useful links==
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You may be interested in my recent publication concerning the use of Open Source principles in teaching bioinformatics.
*[[OpenWetWare:Welcome|Introductory tutorial]]
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*[[Help|OpenWetWare help pages]]
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* Dionisio, JDN and Dahlquist, KD ''Improving the Computer Science in Bioinformatics Through Open Source Pedagogy'' SIGCSE Bulletin 2008 Jun; 40(2) 115-9. doi:10.1145/1383602.1383648 [http://portal.acm.org/citation.cfm?id=1383648&jmp=cit&coll=portal&dl=ACM&CFID=74660743&CFTOKEN=75759974# Abstract]
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 +
 
 +
==Contact Info==
 +
 
 +
Kam D. Dahlquist, Ph.D.
 +
Associate Professor
 +
Department of Biology
 +
Loyola Marymount University
 +
1 LMU Drive, MS8220
 +
Los Angeles, CA 90045-2659 USA
 +
kdahlquist [at] lmu [dot] edu

Latest revision as of 15:54, 5 October 2010

I am the head of the Dahlquist Lab at Loyola Marymount University.

O|B|F Activities

  • Presented at BOSC 2006 (Fortaleza) and became a member of the O|B|F.
  • Presented at BOSC 2007 (Vienna) and attended the O|B|F Board meeting.
  • Chair of the Organizing Committee for BOSC 2008 (Toronto).
  • Chair of the Organizing Committee for BOSC 2009 (Stockholm).
  • Chair of the Organizing Committee for BOSC 2010 (Boston) and Editor of the BOSC 2010 Proceedings.
  • At-large Member of the Board of Directors for the O|B|F from 19 November 2008 to 5 October 2010.

Research Interests

  1. XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources; creating MAPPs and Gene Databases for the GenMAPP software
  2. The Global Transcriptional Response of Saccharomyces cerevisiae to Cold Shock and Recovery
  3. Mathematical Modeling of the Transcriptional Network Controlling the Environmental Stress Response in Saccharomyces cerevisiae
  4. Identifying Soil Bacteria and Biochemical Pathways in the Ballona Wetlands for the Bioremediation of Organic Pollutants

You can learn more about my research at my web page or my OpenWetware Site.

Teaching Interests

You may be interested in my recent publication concerning the use of Open Source principles in teaching bioinformatics.

  • Dionisio, JDN and Dahlquist, KD Improving the Computer Science in Bioinformatics Through Open Source Pedagogy SIGCSE Bulletin 2008 Jun; 40(2) 115-9. doi:10.1145/1383602.1383648 Abstract


Contact Info

Kam D. Dahlquist, Ph.D.
Associate Professor
Department of Biology
Loyola Marymount University
1 LMU Drive, MS8220
Los Angeles, CA 90045-2659 USA
kdahlquist [at] lmu [dot] edu