-

Difference between revisions of "BOSC 2008 schedule"

From Open Bioinformatics Foundation
Jump to: navigation, search
(Change inline use of O|B|F to OBF)
 
(74 intermediate revisions by 5 users not shown)
Line 1: Line 1:
 +
You may also download the entire BOSC program with the schedule and all abstracts as a [http://www.open-bio.org/w/images/b/b6/BOSC2008_program.pdf PDF file] (1971KB).
 +
 +
Return to [[BOSC_2008 | BOSC2008]] main page.
 +
 
<div class=Section1>
 
<div class=Section1>
  
Line 13: Line 17:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
−
   style='font-size:11.0pt'>Friday, July18</span></b></p>
+
   style='font-size:11.0pt'>Friday, July 18</span></b></p>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   style='font-size:11.0pt'></span></b></p>
 
   style='font-size:11.0pt'></span></b></p>
Line 31: Line 35:
 
   2008)</span></p>
 
   2008)</span></p>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>Jason Stajich (President
 
   <p class=MsoNormal><span style='font-size:11.0pt'>Jason Stajich (President
−
   O|B|F)</span></p>
+
   OBF)</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
Line 38: Line 42:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[welcome] Open
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[welcome] Open
−
   Bioinformatics Foundation Update</span></p>
+
   Bioinformatics Foundation Update [http://www.slideshare.net/bosc_2008/introduction-bosc2008/ **SLIDES**]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 84: Line 88:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>10:45-11:05</span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>10:45-11:10</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 97: Line 101:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
−
   Mobyle: a New Full Web Bioinformatics Framework</span></p>
+
   Mobyle: a New Full Web Bioinformatics Framework [http://www.open-bio.org/w/images/c/c7/Menager_Mobyle_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/menager-mobyle-bosc2008/ **SLIDES**]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 104: Line 108:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>11:05-11:30</span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>11:10-11:35</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 117: Line 121:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
−
   Intermine – Open Source Data Warehouse and Query Interface</span></p>
+
   Intermine – Open Source Data Warehouse and Query Interface [http://www.open-bio.org/w/images/e/e5/Smith_R_Intermine_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/smith-inter-mine-bosc2008/ **SLIDES**]
 +
</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 124: Line 129:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>11:30-12:05</span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>11:35-12:00</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 137: Line 142:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] Bridging
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] Bridging
−
   Existing Bioinformatics Tools and Data into Semantic Web Services</span></p>
+
   Existing Bioinformatics Tools and Data into Semantic Web Services [http://www.open-bio.org/w/images/6/69/Gordon_SemanticWeb_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/gordon-semantic-web-2008/ **SLIDES**]
 +
</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 144: Line 150:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>12:05-12:25</span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>12:00-12:25</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 157: Line 163:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
−
   Soaplab2: More Reliable Sesame Door to Bioinformatics Programs</span></p>
+
   Soaplab2: More Reliable Sesame Door to Bioinformatics Programs [http://www.open-bio.org/w/images/3/3c/Rice_Soaplab2_abstract.pdf Abstract]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 194: Line 200:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
−
   BeeSpace:<span style='mso-spacerun:yes'>  </span>An Interactive System for
+
   BeeSpace:<span style='mso-spacerun:yes'> </span>An Interactive System for
−
   Functional Analysis</span></p>
+
   Functional Analysis [http://www.open-bio.org/w/images/2/27/Sanders_Arcoleo_BeeSpace_abstract.pdf Abstract][http://www.beespace.uiuc.edu/files/BeeSpaceBOSC2008_v3.ppt **SLIDES** (PPT)]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 216: Line 222:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
−
   BioDas Project Update</span></p>
+
   BioDas Project Update [http://www.open-bio.org/w/images/6/6c/Jenkinson_BioDas_abstract.pdf Abstract]  [http://www.slideshare.net/bosc_2008/andy-jenkinson-bosc-das-2008/ **SLIDES**]
 +
</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 236: Line 243:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[visualization] E-Cell 3D: 3-Dimensional
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[visualization] E-Cell 3D: 3-Dimensional
−
   Visualization of Dynamic Cell Simulation</span></p>
+
   Visualization of Dynamic Cell Simulation [http://www.open-bio.org/w/images/2/20/Arakawa_E-Cell3D_abstract.pdf Abstract] [http://www.g-language.org/data/gaou/presentation/BOSC08-ECell3D.pdf **SLIDES**]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 256: Line 263:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBOSS:
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBOSS:
−
   European Molecular Biology Open Software Suite</span></p>
+
   European Molecular Biology Open Software Suite [http://www.open-bio.org/w/images/c/ca/Rice_EMBOSS_abstract.pdf Abstract]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 277: Line 284:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioJava
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioJava
−
   Project Update</span></p>
+
   Project Update [http://www.open-bio.org/w/images/1/10/Heuer_BioJava_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/heuer-bio-java-bosc2008/ **SLIDES**]
 +
</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 284: Line 292:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>3:10-3:15</span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>3:10-3:18</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 297: Line 305:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Use the
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Use the
−
   Make Utility for the Maintenance of Complex Bioinformatics Pipelines</span></p>
+
   Make Utility for the Maintenance of Complex Bioinformatics Pipelines [http://www.open-bio.org/w/images/a/a9/Wilson_Make_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/wilson-make-bosc2008/ **SLIDES**]
 +
</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
−
<tr style='mso-yfti-irow:15'>
+
<tr style='mso-yfti-irow:14'>
 
   <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 
   <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>3:15-3:30</span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>3:20-3:28</span></p>
 +
  </td>
 +
  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>Brian O'Connor</span></p>
 
   </td>
 
   </td>
−
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
+
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
−
  border-left:none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Additional Lightning
+
   <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] SolexaTools: An Open Source Sequence Analysis Framework [http://www.open-bio.org/w/images/6/63/OConnor_SolexaTools_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/o-connor-solexa-tools-bosc2008/ **SLIDES**]</span></p>
−
  Talks/Demos/Birds of a Feather</span></p>
 
−
  <p class=MsoNormal><span style='font-size:11.0pt'>See
 
−
  &lt;http://www.open-bio.org/wiki/BOSC_2008_schedule&gt; for updated listings</span></p>
 
 
   </td>
 
   </td>
−
  </tr>
+
  </tr>  
 
  <tr style='mso-yfti-irow:16'>
 
  <tr style='mso-yfti-irow:16'>
 
   <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 
   <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
Line 343: Line 355:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs</span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Additional Lightning Talks/Demos/BOFs</span></p>
 
   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 
   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 
   </td>
 
   </td>
Line 360: Line 372:
 
Arial'>Schedule (Day 2)</span></b></p>
 
Arial'>Schedule (Day 2)</span></b></p>
  
−
<p class=MsoNormal><o:p>&nbsp;</o:p></p>
+
<p class=MsoNormal></p>
  
 
<table class=MsoTableGrid border=1 cellspacing=0 cellpadding=0
 
<table class=MsoTableGrid border=1 cellspacing=0 cellpadding=0
Line 370: Line 382:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
−
   style='font-size:11.0pt'>Saturday, July 19<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>Saturday, July 19</span></b></p>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
−
   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+
   style='font-size:11.0pt'></span></b></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 379: Line 391:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>9:00-9:05<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>9:00-9:05</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 385: Line 397:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Kam Dahlquist<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Kam Dahlquist</span></p>
−
   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
Line 392: Line 404:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Announcements<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Announcements</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 399: Line 411:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>9:05-9:30<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>9:05-9:30</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 405: Line 417:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Mark Wilkinson<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Mark Wilkinson</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
Line 412: Line 424:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Interoperability
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Interoperability
−
   with BioMoby – Past, Present, and Future<o:p></o:p></span></p>
+
   with BioMoby – Past, Present, and Future [http://www.open-bio.org/w/images/d/da/Wilkinson_BioMoby_abstract.pdf Abstract]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 419: Line 431:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>9:30-9:55<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>9:30-9:55</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 425: Line 437:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Joshua Orvis<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Joshua Orvis</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
Line 433: Line 445:
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Ergatis: A
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Ergatis: A
 
   Web-based Bioinformatics Pipeline Management and Collaborative Development
 
   Web-based Bioinformatics Pipeline Management and Collaborative Development
−
   System<o:p></o:p></span></p>
+
   System [http://www.open-bio.org/w/images/5/59/Orvis_Ergatis_abstract.pdf Abstract]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 440: Line 452:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>9:55-10:15<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>9:55-10:15</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 446: Line 458:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Aleksi Kallio<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Aleksi Kallio</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
Line 453: Line 465:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Chipster – User
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Chipster – User
−
   Friendly DNA Microarray Analysis Software<o:p></o:p></span></p>
+
   Friendly DNA Microarray Analysis Software [http://www.open-bio.org/w/images/7/7e/Kallio_Chipster_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/kallio-chipster-bosc2008/ **SLIDES**]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 461: Line 473:
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
−
   style='font-size:11.0pt'>10:15-10:45<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>10:15-10:45</span></b></p>
 
   </td>
 
   </td>
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
Line 468: Line 480:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
−
   style='font-size:11.0pt'>Coffee Break<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>Coffee Break</span></b></p>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
−
   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+
   style='font-size:11.0pt'></span></b></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 477: Line 489:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>10:45-11:10<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>10:45-11:10</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 483: Line 495:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Jiten Bhagat<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Jiten Bhagat</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
Line 490: Line 502:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] myExperiment:
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] myExperiment:
−
   Social Software for Sharing Workflows<o:p></o:p></span></p>
+
   Social Software for Sharing Workflows [http://www.open-bio.org/w/images/7/75/Bhagat_myExperiment_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/bhagat-myexperiment-bosc2008/ **SLIDES**]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 497: Line 509:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>11:10-11:30<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>11:10-11:30</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 503: Line 515:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Todd Smith<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Todd Smith</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
Line 510: Line 522:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] BioHDF: Open Binary
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] BioHDF: Open Binary
−
   File Formats for Large Scale Data Management<o:p></o:p></span></p>
+
   File Formats for Large Scale Data Management [http://www.open-bio.org/w/images/2/22/Smith_T_BioHDF_Abstract_revised.pdf Abstract] [http://www.slideshare.net/bosc_2008/smith-t-bio-hdf-bosc2008/ **SLIDES**]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 517: Line 529:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>11:30-11:50<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>11:30-11:50</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 523: Line 535:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Aaron Kitzmiller<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Aaron Kitzmiller</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
Line 531: Line 543:
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[open source software] The
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[open source software] The
 
   Open HeliSphere<sup>TM</sup> Project: True Open Source from the Inventors of
 
   Open HeliSphere<sup>TM</sup> Project: True Open Source from the Inventors of
−
   True Single Molecule Sequencing<o:p></o:p></span></p>
+
   True Single Molecule Sequencing [http://www.open-bio.org/w/images/f/fb/Kitzmiller_OpenHeliSphere_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/kitzmiller-openhelisphereproject-bosc2008/ **SLIDES**]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 538: Line 550:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>11:50-12:10<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>11:50-12:10</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 544: Line 556:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Ed Lee<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Ed Lee</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
Line 551: Line 563:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[open source software]
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[open source software]
−
   Apollo: a Sequence Annotation Editor (with demonstration to follow)<o:p></o:p></span></p>
+
   Apollo: a Sequence Annotation Editor (with demonstration to follow) [http://www.open-bio.org/w/images/3/3a/Lee_Apollo_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/lee-apollo-bosc2008/ **SLIDES**]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 559: Line 571:
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
−
   style='font-size:11.0pt'>12:30-1:30<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>12:30-1:30</span></b></p>
 
   </td>
 
   </td>
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
Line 566: Line 578:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
−
   style='font-size:11.0pt'>Lunch<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>Lunch</span></b></p>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
−
   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+
   style='font-size:11.0pt'></span></b></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 575: Line 587:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>1:30-1:50<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>1:30-1:50</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 581: Line 593:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Hilmar Lapp<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Hilmar Lapp</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
Line 588: Line 600:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioSQL
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioSQL
−
   Reloaded: 1.0 Release, PhyloDB Module, and Future Features<o:p></o:p></span></p>
+
   Reloaded: 1.0 Release, PhyloDB Module, and Future Features [http://www.open-bio.org/w/images/3/3b/Lapp_BioSQL_abstract.pdf Abstract] [http://www.slideshare.net/hlapp/lapp-biosql-bosc2008 **SLIDES**]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 595: Line 607:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>1:50-2:10<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>1:50-2:10</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 601: Line 613:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Syed Haider<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Syed Haider</span></p>
−
   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
Line 609: Line 621:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBRACE –
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBRACE –
−
   BioMart Developments and Future<o:p></o:p></span></p>
+
   BioMart Developments and Future [http://www.open-bio.org/w/images/1/10/Haider_EMBRACE_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/haider-embrace-bosc2008/ **SLIDES**]</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 616: Line 628:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>2:10-2:30<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>2:10-2:30</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
Line 622: Line 634:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Tiago Antão <o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Tiago Antão </span></p>
−
   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
Line 630: Line 642:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] Biopython
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] Biopython
−
   Project Update<o:p></o:p></span></p>
+
   Project Update 2008 [http://www.open-bio.org/w/images/e/e3/Antao_Biopython_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/antao-biopython-bosc2008/ **SLIDES**]
 +
</span></p>
 +
  </td>
 +
</tr>
 +
<tr style='mso-yfti-irow:13'>
 +
  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 +
  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 +
  padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>2:30-2:38</span></p>
 +
  </td>
 +
  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>Scott Cain</span></p>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 +
  </td>
 +
  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] [http://gmod.org/wiki/index.php/Community_Annotation_System GMOD]</span></p>
 +
  </td>
 +
</tr>
 +
<tr style='mso-yfti-irow:13'>
 +
  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 +
  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 +
  padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>2:38-2:46</span></p>
 +
  </td>
 +
  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>Kannan Vijayan & Dustin Cram</span></p>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 +
  </td>
 +
  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Fiesta</span></p>
 +
  </td>
 +
</tr>
 +
<tr style='mso-yfti-irow:13'>
 +
  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 +
  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 +
  padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>2:46-2:54</span></p>
 +
  </td>
 +
  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>Ben Faga</span></p>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 +
  </td>
 +
  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] CMap: A Comparative Viewer [http://www.slideshare.net/bosc_2008/faga-c-map-bosc2008/ **SLIDES**]
 +
</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
−
  <tr style='mso-yfti-irow:14'>
+
  <tr style='mso-yfti-irow:13'>
 +
  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 +
  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 +
  padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>2:54-3:02</span></p>
 +
  </td>
 +
  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>John Greene</span></p>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 +
  </td>
 +
  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] ERIC: Enteropathogen Resource Information Center [http://www.slideshare.net/bosc_2008/greene-bosc2008/ **SLIDES**]</span></p>
 +
  </td>
 +
</tr>
 +
  <tr style='mso-yfti-irow:13'>
 +
  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 +
  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 +
  padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>3:02-3:10</span></p>
 +
  </td>
 +
  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>Aaron J. Mackey</span></p>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 +
  </td>
 +
  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Off the Beaten Track--Buried Treasure and Hidden Jewels in BioPerl [http://www.slideshare.net/bosc_2008/mackey-bio-perl-bosc2008/ **SLIDES**]</span></p>
 +
  </td>
 +
</tr>
 +
  <tr style='mso-yfti-irow:13'>
 +
  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 +
  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 +
  padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>3:10-3:18</span></p>
 +
  </td>
 +
  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>Saravanamuttu Gnaneshan</span></p>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 +
  </td>
 +
  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Web Application Developments with Open Bio in Public health Informatics [http://www.slideshare.net/bosc_2008/gnaneshan-public-health-bosc2008/ **SLIDES**]</span></p>
 +
  </td>
 +
</tr>
 +
  <tr style='mso-yfti-irow:13'>
 +
  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 +
  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 +
  padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>3:18-3:26</span></p>
 +
  </td>
 +
  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>Pjotr Prins (''in absentia'')</span></p>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 +
  </td>
 +
  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] BioLib [http://www.slideshare.net/bosc_2008/prins-bio-lib-bosc2008/ **SLIDES**]</span></p>
 +
  </td>
 +
  </tr>
 +
<tr style='mso-yfti-irow:13'>
 
   <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 
   <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>2:30-3:30<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>3:26-3:30</span></p>
 +
  </td>
 +
  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 +
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 +
  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 +
  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'>Gregg Helt</span></p>
 +
  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 
   </td>
 
   </td>
−
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
+
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
−
  border-left:none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+
  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Exploratory Analysis with DAS/2 and the Integrated Genome Browser (IGB)</span></p>
−
  <p class=MsoNormal><span style='font-size:11.0pt'>See
 
−
  &lt;http://www.open-bio.org/wiki/BOSC_2008_schedule&gt; for updated listings<o:p></o:p></span></p>
 
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
−
<tr style='mso-yfti-irow:15;height:4.45pt'>
+
<tr style='mso-yfti-irow:15;height:4.45pt'>
 
   <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 
   <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt;height:4.45pt'>
 
   padding:0in 5.4pt 0in 5.4pt;height:4.45pt'>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
−
   style='font-size:11.0pt'>3:30-4:00<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>3:30-4:00</span></b></p>
 
   </td>
 
   </td>
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
Line 660: Line 819:
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt;height:4.45pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt;height:4.45pt'>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
−
   style='font-size:11.0pt'>Coffee Break<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>Coffee Break</span></b></p>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
−
   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+
   style='font-size:11.0pt'></span></b></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
Line 669: Line 828:
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
 
   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>4:00-5:30<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>4:00-5:30</span></p>
 
   </td>
 
   </td>
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
Line 675: Line 834:
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
−
   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs</span></p>
−
   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+
  <p class=MsoNormal><span style='font-size:11.0pt'>[demo] Ergatis - Joshua Orvis</span></p>
−
  </td>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Genographer - Travis Banks [http://www.slideshare.net/bosc_2008/banks-genographer-bosc2008/ **SLIDES**]
 +
</span></p>
 +
<p class=MsoNormal><span style='font-size:11.0pt'>[BOFs] See [[BOSC_2008/Birds-of-a-Feather]]</span></p>
 +
</td>
 
  </tr>
 
  </tr>
 
</table>
 
</table>
 +
Return to [[BOSC_2008 | BOSC2008]] main page.

Latest revision as of 18:17, 7 September 2015

You may also download the entire BOSC program with the schedule and all abstracts as a PDF file (1971KB).

Return to BOSC2008 main page.

Schedule (Day 1)

Friday, July 18

9:00-9:15

Kam Dahlquist (Chair BOSC 2008)

Jason Stajich (President OBF)

[welcome] Open Bioinformatics Foundation Update **SLIDES**

9:15-10:15

Julian Lombardi

[keynote] Croquet: An Open Collaboration Architecture for Scientific Visualization and Simulation

10:15-10:45

Coffee Break

10:45-11:10

Hervé Ménager

[cyberinfrastructure] Mobyle: a New Full Web Bioinformatics Framework Abstract **SLIDES**

11:10-11:35

Richard Smith

[cyberinfrastructure] Intermine – Open Source Data Warehouse and Query Interface Abstract **SLIDES**

11:35-12:00

Paul Gordon

[cyberinfrastructure] Bridging Existing Bioinformatics Tools and Data into Semantic Web Services Abstract **SLIDES**

12:00-12:25

Peter Rice

[cyberinfrastructure] Soaplab2: More Reliable Sesame Door to Bioinformatics Programs Abstract

12:30-1:30

Lunch

1:30-1:50

Barry Sanders & David Arcoleo

[cyberinfrastructure] BeeSpace: An Interactive System for Functional Analysis Abstract**SLIDES** (PPT)

1:50-2:10

Andrew Jenkinson

[cyberinfrastructure] BioDas Project Update Abstract **SLIDES**

2:10-2:30

Kazuharu Arakawa

[visualization] E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation Abstract **SLIDES**

2:30-2:50

Peter Rice

[bio*update] EMBOSS: European Molecular Biology Open Software Suite Abstract

2:50-3:10

Michael Heuer

[bio*update] BioJava Project Update Abstract **SLIDES**

3:10-3:18

Justin Wilson

[lightning talk] Use the Make Utility for the Maintenance of Complex Bioinformatics Pipelines Abstract **SLIDES**

3:20-3:28

Brian O'Connor

[lightning talk] SolexaTools: An Open Source Sequence Analysis Framework Abstract **SLIDES**

3:30-4:00

Coffee Break

4:00-5:30

Additional Lightning Talks/Demos/BOFs


Schedule (Day 2)

Saturday, July 19

9:00-9:05

Kam Dahlquist

Announcements

9:05-9:30

Mark Wilkinson

[workflows] Interoperability with BioMoby – Past, Present, and Future Abstract

9:30-9:55

Joshua Orvis

[workflows] Ergatis: A Web-based Bioinformatics Pipeline Management and Collaborative Development System Abstract

9:55-10:15

Aleksi Kallio

[workflows] Chipster – User Friendly DNA Microarray Analysis Software Abstract **SLIDES**

10:15-10:45

Coffee Break

10:45-11:10

Jiten Bhagat

[workflows] myExperiment: Social Software for Sharing Workflows Abstract **SLIDES**

11:10-11:30

Todd Smith

[workflows] BioHDF: Open Binary File Formats for Large Scale Data Management Abstract **SLIDES**

11:30-11:50

Aaron Kitzmiller

[open source software] The Open HeliSphereTM Project: True Open Source from the Inventors of True Single Molecule Sequencing Abstract **SLIDES**

11:50-12:10

Ed Lee

[open source software] Apollo: a Sequence Annotation Editor (with demonstration to follow) Abstract **SLIDES**

12:30-1:30

Lunch

1:30-1:50

Hilmar Lapp

[bio*update] BioSQL Reloaded: 1.0 Release, PhyloDB Module, and Future Features Abstract **SLIDES**

1:50-2:10

Syed Haider

[bio*update] EMBRACE – BioMart Developments and Future Abstract **SLIDES**

2:10-2:30

Tiago Antão

[bio*update] Biopython Project Update 2008 Abstract **SLIDES**

2:30-2:38

Scott Cain

[lightning talk] GMOD

2:38-2:46

Kannan Vijayan & Dustin Cram

[lightning talk] Fiesta

2:46-2:54

Ben Faga

[lightning talk] CMap: A Comparative Viewer **SLIDES**

2:54-3:02

John Greene

[lightning talk] ERIC: Enteropathogen Resource Information Center **SLIDES**

3:02-3:10

Aaron J. Mackey

[lightning talk] Off the Beaten Track--Buried Treasure and Hidden Jewels in BioPerl **SLIDES**

3:10-3:18

Saravanamuttu Gnaneshan

[lightning talk] Web Application Developments with Open Bio in Public health Informatics **SLIDES**

3:18-3:26

Pjotr Prins (in absentia)

[lightning talk] BioLib **SLIDES**

3:26-3:30

Gregg Helt

[lightning talk] Exploratory Analysis with DAS/2 and the Integrated Genome Browser (IGB)

3:30-4:00

Coffee Break

4:00-5:30

Lightning Talks/Demos/BOFs

[demo] Ergatis - Joshua Orvis

[lightning talk] Genographer - Travis Banks **SLIDES**

[BOFs] See BOSC_2008/Birds-of-a-Feather
Return to BOSC2008 main page.
Retrieved from "https://www.open-bio.org/w/index.php?title=BOSC_2008_schedule&oldid=1113"