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Difference between revisions of "BOSC 2014 Schedule"

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(BOSC Day 1: Friday 11 July 2014)
(BOSC Day 1: Friday 11 July 2014)
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| '''12:30-1:30'''
 
| '''12:30-1:30'''
 
| '''Lunch'''
 
| '''Lunch'''
| (And Posters)
+
| (and poster session)
 
|-
 
|-
 
| 1:00-2:00
 
| 1:00-2:00
 
| '''Poster Session and Birds of a Feather'''
 
| '''Poster Session and Birds of a Feather'''
| (Overlapping with lunch)
+
| (overlapping with lunch)
 
|-
 
|-
 
| 14:00-15:30
 
| 14:00-15:30
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| ''Session: Bioinformatics Open Source Project Updates''
 
| ''Session: Bioinformatics Open Source Project Updates''
 
| Chair: Peter Cock
 
| Chair: Peter Cock
 +
|-
 +
| 16:00
 +
| [Updates] BioMart 0.9 – introducing tools for data analysis and visualisation
 +
| Arek Kasprzyk
 +
|-
 +
| 16:12
 +
| [Updates]  Biocaml: The OCaml Bioinformatics Library
 +
| Ashish Agarwal
 +
|-
 +
| 16:24
 +
| [Updates]  BioRuby and distributed development
 +
| Raoul Bonnal (?)
 +
|-
 +
| 16:36
 +
| [Updates]  Biopython Project Update
 +
| Wibowo Arindrarto
 +
|-
 +
| 16:48
 +
| [Updates]  Shared bioinformatics database within Unipro UGENE
 +
| Ivan Protsyuk
 
|-
 
|-
 
| 17:00-18:00
 
| 17:00-18:00

Revision as of 06:10, 25 May 2014

BOSC logo

This is a working draft. Once finalised, you will also be able to:

- Download schedule as PDF

- Download the complete program.

Pre-BOSC Codefest: July 9-10, 2014

See Codefest 2014 for details.

BOSC

BOSC Day 1: Friday 11 July 2014

Time Topic Speaker, Moderator, or notes
7:30-9:00 Registration Early arrival is recommended as there are usually long lines
9:00-9:15 Introduction and welcome Nomi Harris and/or Peter Cock (Chairs, BOSC 2014)
9:15-10:15 Keynote: A History of Bioinformatics (in the year 2039) C. Titus Brown
10:15-10:45 Coffee Break
10:45-12:30 Session: Genome-scale Data and Beyond Chair: Chris Fields
10:45 [Genome-Scale] ADAM: Fast, Scalable Genomic Analysis Frank Austin Nothaft
11:05 [Genome-Scale] A framework for benchmarking RNA-seq pipelines Rory Kirchner
11:25 [Genome-Scale] New Frontiers of Genome Assembly with SPAdes 3.1 Andrey Prjibelski
11:45 [Genome-Scale] SigSeeker: An Ensemble for Analysis of Epigenetic Data Jens Lichtenberg
12:05 [Genome-Scale] Pathview: an R/Bioconductor package for pathway-based data integration and visualization Weijun Luo
12:30-1:30 Lunch (and poster session)
1:00-2:00 Poster Session and Birds of a Feather (overlapping with lunch)
14:00-15:30 Session: Visualization Chair: Rob Davey
14:00 [Visualization] WormGUIDES: an Interactive Informatic Developmental Atlas at Subcellular Resolution Anthony Santella
14:18 [Visualization] BioJS: an open source standard for biological visualisation Manuel Corpas
14:36 [Visualization] Biodalliance: a fast, extensible genome browser Thomas Down
14:54 [Visualization] TGAC Browser: visualisation solutions for big data in the genomic era Anil S. Thanki
15:12 [Visualization] Explore, analyze, and share genomic data using Integrated Genome Browser Ann Loraine
15:30-16:00 Coffee Break
16:00-17:00 Session: Bioinformatics Open Source Project Updates Chair: Peter Cock
16:00 [Updates] BioMart 0.9 – introducing tools for data analysis and visualisation Arek Kasprzyk
16:12 [Updates] Biocaml: The OCaml Bioinformatics Library Ashish Agarwal
16:24 [Updates] BioRuby and distributed development Raoul Bonnal (?)
16:36 [Updates] Biopython Project Update Wibowo Arindrarto
16:48 [Updates] Shared bioinformatics database within Unipro UGENE Ivan Protsyuk
17:00-18:00 Lightning Talks followed by BOFs Suggest a BOF topic here!
19:00 Pay-your-own-way BOSC dinner


BOSC logo

BOSC Day 2: Saturday 12 July 2014

Time Topic Speaker or Moderator
8:45 - 8:50 Announcements Peter Cock and/or Nomi Harris (Chairs, BOSC 2014)
8:50 - 9:00 Codefest 2014 Report Brad Chapman
9:00 - 9:15 Open Bioinformatics Foundation (OBF) update Hilmar Lapp (President, Open Bioinformatics Foundation)
9:15 - 10:15 Keynote: Biomedical Research as an Open Digital Enterprise Philip Bourne
10:15-10:45 Coffee Break
10:45-12:30 Session: Open Science and Reproducible Research Chair: Hilmar Lapp
12:30-13:30 Lunch (and posters)
12:30-13:30 Poster Session (Overlapping with Lunch)
13:30-15:30 Session: Software Interoperability Chair: Raoul Bonnal
15:30-16:00 Coffee Break
16:00-16:15 Session: Software Interoperability (continued) Chair: Raoul Bonnal
16:15-17:05 Panel: Reproducibility: Rewards and Challenges Moderator: Brad Chapman; Panelists: Phil Bourne, Titus Brown, Varsha Khodiyar, Kay Thaney
17:05-17:15 Presentation of Student Travel Awards Peter Cock and/or Nomi Harris (Chairs, BOSC 2014)
17:20-18:00 BOFs Suggest a BOF topic here!

Note the ISMB reception starts at 17:30...


Posters

Shared links to presented posters will be posted here:

Title Presenter
... A.N. Other et al.



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