Please visit our ***NEW*** OBF/BOSC website: https://www.open-bio.org/ |
-
Difference between revisions of "BOSC 2008 schedule"
m (Added working link to Sanders/Arcoleo Beespace slides (sorry for the delay in posting)) |
(Change inline use of O|B|F to OBF) |
||
(One intermediate revision by one other user not shown) | |||
Line 35: | Line 35: | ||
2008)</span></p> | 2008)</span></p> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>Jason Stajich (President | <p class=MsoNormal><span style='font-size:11.0pt'>Jason Stajich (President | ||
− | + | OBF)</span></p> | |
</td> | </td> | ||
<td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | <td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | ||
Line 642: | Line 642: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] Biopython | <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] Biopython | ||
− | Project Update [http://www.open-bio.org/w/images/e/e3/Antao_Biopython_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/antao-biopython-bosc2008/ **SLIDES**] | + | Project Update 2008 [http://www.open-bio.org/w/images/e/e3/Antao_Biopython_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/antao-biopython-bosc2008/ **SLIDES**] |
</span></p> | </span></p> | ||
</td> | </td> |
Latest revision as of 18:17, 7 September 2015
You may also download the entire BOSC program with the schedule and all abstracts as a PDF file (1971KB).
Return to BOSC2008 main page.
Schedule (Day 1)
Friday, July 18
|
||
9:00-9:15 |
Kam Dahlquist (Chair BOSC 2008) Jason Stajich (President OBF) |
[welcome] Open Bioinformatics Foundation Update **SLIDES** |
9:15-10:15 |
Julian Lombardi |
[keynote] Croquet: An Open Collaboration Architecture for Scientific Visualization and Simulation |
10:15-10:45 |
Coffee Break
|
|
10:45-11:10 |
Hervé Ménager |
[cyberinfrastructure] Mobyle: a New Full Web Bioinformatics Framework Abstract **SLIDES** |
11:10-11:35 |
Richard Smith |
[cyberinfrastructure] Intermine – Open Source Data Warehouse and Query Interface Abstract **SLIDES** |
11:35-12:00 |
Paul Gordon |
[cyberinfrastructure] Bridging Existing Bioinformatics Tools and Data into Semantic Web Services Abstract **SLIDES** |
12:00-12:25 |
Peter Rice |
[cyberinfrastructure] Soaplab2: More Reliable Sesame Door to Bioinformatics Programs Abstract |
12:30-1:30 |
Lunch
|
|
1:30-1:50 |
Barry Sanders & David Arcoleo |
[cyberinfrastructure] BeeSpace: An Interactive System for Functional Analysis Abstract**SLIDES** (PPT) |
1:50-2:10 |
Andrew Jenkinson
|
[cyberinfrastructure] BioDas Project Update Abstract **SLIDES** |
2:10-2:30 |
Kazuharu Arakawa |
[visualization] E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation Abstract **SLIDES** |
2:30-2:50 |
Peter Rice |
[bio*update] EMBOSS: European Molecular Biology Open Software Suite Abstract |
2:50-3:10 |
Michael Heuer
|
[bio*update] BioJava Project Update Abstract **SLIDES** |
3:10-3:18 |
Justin Wilson |
[lightning talk] Use the Make Utility for the Maintenance of Complex Bioinformatics Pipelines Abstract **SLIDES** |
3:20-3:28 |
Brian O'Connor |
[lightning talk] SolexaTools: An Open Source Sequence Analysis Framework Abstract **SLIDES** |
3:30-4:00 |
Coffee Break
|
|
4:00-5:30 |
Additional Lightning Talks/Demos/BOFs
|
Schedule (Day 2)
Saturday, July 19
|
||
9:00-9:05 |
Kam Dahlquist
|
Announcements |
9:05-9:30 |
Mark Wilkinson |
[workflows] Interoperability with BioMoby – Past, Present, and Future Abstract |
9:30-9:55 |
Joshua Orvis |
[workflows] Ergatis: A Web-based Bioinformatics Pipeline Management and Collaborative Development System Abstract |
9:55-10:15 |
Aleksi Kallio |
[workflows] Chipster – User Friendly DNA Microarray Analysis Software Abstract **SLIDES** |
10:15-10:45 |
Coffee Break
|
|
10:45-11:10 |
Jiten Bhagat |
[workflows] myExperiment: Social Software for Sharing Workflows Abstract **SLIDES** |
11:10-11:30 |
Todd Smith |
[workflows] BioHDF: Open Binary File Formats for Large Scale Data Management Abstract **SLIDES** |
11:30-11:50 |
Aaron Kitzmiller |
[open source software] The Open HeliSphereTM Project: True Open Source from the Inventors of True Single Molecule Sequencing Abstract **SLIDES** |
11:50-12:10 |
Ed Lee |
[open source software] Apollo: a Sequence Annotation Editor (with demonstration to follow) Abstract **SLIDES** |
12:30-1:30 |
Lunch
|
|
1:30-1:50 |
Hilmar Lapp |
[bio*update] BioSQL Reloaded: 1.0 Release, PhyloDB Module, and Future Features Abstract **SLIDES** |
1:50-2:10 |
Syed Haider
|
[bio*update] EMBRACE – BioMart Developments and Future Abstract **SLIDES** |
2:10-2:30 |
Tiago Antão
|
[bio*update] Biopython Project Update 2008 Abstract **SLIDES** |
2:30-2:38 |
Scott Cain
|
[lightning talk] GMOD |
2:38-2:46 |
Kannan Vijayan & Dustin Cram
|
[lightning talk] Fiesta |
2:46-2:54 |
Ben Faga
|
[lightning talk] CMap: A Comparative Viewer **SLIDES** |
2:54-3:02 |
John Greene
|
[lightning talk] ERIC: Enteropathogen Resource Information Center **SLIDES** |
3:02-3:10 |
Aaron J. Mackey
|
[lightning talk] Off the Beaten Track--Buried Treasure and Hidden Jewels in BioPerl **SLIDES** |
3:10-3:18 |
Saravanamuttu Gnaneshan
|
[lightning talk] Web Application Developments with Open Bio in Public health Informatics **SLIDES** |
3:18-3:26 |
Pjotr Prins (in absentia)
|
[lightning talk] BioLib **SLIDES** |
3:26-3:30 |
Gregg Helt
|
[lightning talk] Exploratory Analysis with DAS/2 and the Integrated Genome Browser (IGB) |
3:30-4:00 |
Coffee Break
|
|
4:00-5:30 |
Lightning Talks/Demos/BOFs [demo] Ergatis - Joshua Orvis [lightning talk] Genographer - Travis Banks **SLIDES** [BOFs] See BOSC_2008/Birds-of-a-Feather |