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Difference between revisions of "BOSC 2009 Schedule"
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− | Return to [[BOSC_2009 | BOSC 2009]] main page. | + | * Return to '''[[BOSC_2009 | BOSC 2009]]''' main page. |
+ | * Click on the talk title to view the individual abstract as a PDF file. | ||
+ | * Click '''[[Media:BOSC2009_program_20090601.pdf | here]]''' to download full program in PDF format (2 MB). | ||
+ | * Important '''[[BOSC_2009#Information_for_Speakers | Information for Speakers]]''' | ||
− | == | + | == Schedule == |
− | + | {| border="1" cellspacing="0" cellpadding="10" align="left" | |
+ | ! Day 1 | ||
+ | ! Saturday | ||
+ | ! June 27 | ||
+ | |- | ||
+ | | 9:00-9:15am | ||
+ | | Kam Dahlquist | ||
+ | | [Welcome] [http://www.slideshare.net/bosc/bosc-intro-20090627 ***SLIDES***] | ||
+ | |- | ||
+ | | 9:15-10:15 | ||
+ | | [[BOSC_2009#Alan_Ruttenberg | Alan Ruttenberg]] | ||
+ | | [Keynote] Can we reduce the burden of data integration? Challenge and opportunity in building the web of data | ||
+ | |- | ||
+ | | '''10:15-10:45''' | ||
+ | | '''Coffee Break''' | ||
+ | |- | ||
+ | | 10:45-11:05 | ||
+ | | Jean-Stéphane Varré | ||
+ | | [Multicore & GPGPU Computing] [[Media:Bosc2009_submission_22.pdf | Biomanycores, a repository of interoperable open-source code for many-cores bioinformatics]] [http://www.slideshare.net/bosc/varrebiomanycoresbosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 11:05-11:25 | ||
+ | | Josh Buckner | ||
+ | | [Multicore & GPGPU Computing] [[Media:Bosc2009_submission_32.pdf | Enabling GPU Computing in the R Statistical Environment]] [http://www.slideshare.net/bosc/bucknergpurbosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 11:25-11:40 | ||
+ | | Mikhail Fursov | ||
− | + | (cancelled) | |
+ | | [Multicore & GPGPU Computing] [[Media:Bosc2009_submission_18.pdf | UGENE – A practical approach for complex computational analysis in molecular biology]] | ||
+ | |- | ||
+ | | 11:40-11:48 | ||
+ | | Oswaldo Trelles | ||
− | [ | + | (talk given by Pjotr Prins) |
− | + | | [Multicore & GPGPU Computing Lightning Talk] [[Media:Bosc2009_submission_11.pdf | Qnorm: A library of parallel methods for gene-expression Q-normalization]] [http://www.slideshare.net/bosc/trellesqnormbosc2009 ***SLIDES***] | |
+ | |- | ||
+ | | 11:48-12:08pm | ||
+ | | Hajo N. Krabbenhöft | ||
+ | | [Computational Grids] [[Media:Bosc2009_submission_31.pdf | Taverna workflows across Grids, web services and the command line]] [http://www.slideshare.net/bosc/krabbenhofttavernaarcbosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 12:08-12:23 | ||
+ | | Ann-Kristin Grimm | ||
− | + | (talk given by Steffen Moeller) | |
+ | | [Computational Grids] [[Media:Bosc2009_submission_12.pdf | Grid-based expression QTL analysis]] [http://www.slideshare.net/bosc/moellergridqtlbosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 12:23-12:31 | ||
+ | | Joel Hedlund | ||
+ | | [Computational Grids Lightning Talk] [[Media:Bosc2009_submission_28.pdf | The Nordic BioGrid project -- Bioinformatics for the grid]] [http://www.slideshare.net/bosc/hedlundbiogridbosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | '''12:31-2:00''' | ||
+ | | '''Lunch''' | ||
+ | |- | ||
+ | | 2:00-2:20 | ||
+ | | Allan Kuchinsky | ||
+ | | [Visualization] [[Media:Bosc2009_submission_23.pdf | Cytoscape Springs Forward: Re-architecture for Version 3.0]] [http://www.slideshare.net/bosc/kuchinskycytoscapebosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 2:20-2:33 | ||
+ | | Frederik Decouttere | ||
+ | | [Visualization] [[Media:Bosc2009_submission_8.pdf | Bioinformatics simplified with seqpad]] [http://www.slideshare.net/bosc/decouttereseqpad-bosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 2:33-2:46 | ||
+ | | Bernat Gel | ||
+ | | [Visualization] [[Media:Bosc2009_submission_26.pdf | DASGenExp: an interactive web-based DAS client with client-side rendering]] [http://www.slideshare.net/bosc/geldasgenexpbosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 2:46-2:59 | ||
+ | | Kazuharu Arakawa | ||
+ | | [OS Software] [[Media:Bosc2009_submission_39.pdf | Web Service Interface for G-language Genome Analysis Environment]] [http://www.slideshare.net/bosc/arakawaglanguagebosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 2:59-3:12 | ||
+ | | Sylvain Brohée | ||
+ | | [OS Software] [[Media:Bosc2009_submission_3.pdf | Best of both worlds : combining the user-friendliness of Wikis and the rigor of biological databases]] [http://www.slideshare.net/bosc/broheewikibosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 3:12-3:30 | ||
+ | | Bartek Wilczynski | ||
+ | | [Regulatory Genomics] [[Media:Bosc2009_submission_29.pdf | BNfinder: free software for effective Bayesian Network inference]] [http://www.slideshare.net/bosc/wilczynskibnfinderbosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | '''3:30-4:00''' | ||
+ | | '''Coffee Break''' | ||
+ | |- | ||
+ | | 4:00-4:20 | ||
+ | | Morris Swertz | ||
+ | | [Data & Analysis Management] [[Media:Bosc2009_submission_27.pdf | MOLGENIS by example: generating an extensible platform for genotype and phenotype experiments]] [http://www.slideshare.net/bosc/swertz-molgenis-bosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 4:20-4:40 | ||
+ | | Robert Murphy | ||
+ | | [Data & Analysis Management] [[Media:Bosc2009_submission_34.pdf | PSLID, the Protein Subcellular Location Image Database: Subcellular location assignments, annotated image collections, image analysis tools, and generative models of protein distributions]] [http://www.slideshare.net/bosc/murphypslidbosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | |4:40-5:00 | ||
+ | | Mark Welsh | ||
+ | | [Data & Analysis Management] [[Media:Bosc2009_submission_10.pdf | BioHDF: Open binary file formats for large-scale data management – Project Update]] [http://www.slideshare.net/bosc/welshbiohdfbosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 5:00-5:15 | ||
+ | | Brad Chapman | ||
+ | | [Data & Analysis Management] [[Media:Bosc2009_submission_14.pdf | Lowering barriers to publishing biological data on the web]] [http://www.slideshare.net/bosc/chapmanpublishingwebbosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 5:15-5:30 | ||
+ | | Kam Dahlquist | ||
+ | | [Data & Analysis Management] [[Media:Bosc2009_submission_35.pdf | XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources]] [http://www.slideshare.net/bosc/dahlquistxmlpipedbbosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 5:30-6:00 | ||
+ | | | ||
+ | | [Lightning Talks] | ||
+ | 5:30 Matias Piipari - [http://imotifs.pearcomp.com/ iMotifs]: a motif viewer/editor for the Mac [http://www.slideshare.net/bosc/piipariimotifbosc2009 ***SLIDES***] | ||
− | + | 5:38 Kristian Rother - [http://genesilico.pl/moderna/ ModeRNA] - an Open Source platform for RNA 3D modeling [http://www.slideshare.net/bosc/rothermodernabosc2009 ***SLIDES***] | |
− | + | 5:46 Tiago Antao - [http://code.google.com/p/openmalaria openmalaria] - A simulator of malaria epidemology and control [http://www.slideshare.net/bosc/antaoopenmalariabosc2009 ***SLIDES***] | |
− | + | [[BOSC_2009/Birds-of-a-Feather | Birds of a Feather]] | |
− | + | |- | |
− | + | | 6:15 | |
− | + | | | |
− | + | | <nowiki>OBF</nowiki> Board Meeting and No-host Dinner - Rica Talk Hotel Restaurant | |
− | + | |- | |
− | + | | '''Day 2''' | |
− | + | | '''Sunday''' | |
− | + | | '''June 28''' | |
− | + | |- | |
− | + | | 9:00-9:15am | |
− | + | | Kam Dahlquist | |
− | + | | [Announcements] | |
− | + | |- | |
− | + | | 9:15-10:15 | |
− | + | | [[BOSC_2009#Robert_S._Hanmer | Robert Hanmer]] | |
− | + | | [Keynote] Software Patterns for Reusable Design [http://www.slideshare.net/bosc/hanmer-software-patterns-bosc2009 ***SLIDES***] | |
− | + | |- | |
− | + | | '''10:15-10:45''' | |
− | + | | '''Coffee Break''' | |
− | + | |- | |
− | + | | 10:45-11:00 | |
− | * | + | | Peter Rice |
− | + | | [Bio* Update] [[Media:Bosc2009_submission_5.pdf | EMBOSS: European Molecular Biology Open Software Suite]] [http://www.slideshare.net/bosc/rice-emboss-bosc2009 ***SLIDES***] | |
− | + | |- | |
− | + | | 11:00-11:15 | |
− | + | | Peter Cock | |
− | + | | [Bio* Update] [[Media:Bosc2009_submission_19.pdf | Biopython Project Update 2009]] [http://www.slideshare.net/bosc/cock-biopython-bosc2009 ***SLIDES***] [http://biopython.org/DIST/docs/presentations/Biopython_BOSC_2009.pdf ***PDF***] | |
− | + | |- | |
− | * | + | | 11:15-11:30 |
− | * | + | | [http://biojava.org/wiki/Andreas_Prlic Andreas Prlic] |
− | + | | [Bio* Update] [[Media:Bosc2009_submission_15.pdf | BioJava 2009: an Open-Source Framework for Bioinformatics]] [http://www.slideshare.net/bosc/prlic-bio-java-bosc2009 ***SLIDES***] | |
− | + | |- | |
− | + | | 11:30-11:45 | |
− | + | | Jim Procter | |
− | + | | [Bio* Update] [[Media:Bosc2009_submission_16.pdf | Application of VAMSAS enabled tools for the investigation of protein evolution]] [http://www.slideshare.net/bosc/procter-vamsas-bosc2009 ***SLIDES***] | |
− | + | |- | |
− | * | + | | 11:45-12:00pm |
− | + | | Martin Senger | |
− | + | | [Bio* Update] [[Media:Bosc2009_submission_13.pdf | Soaplab: Open Source Web Services Framework for Bioinformatics Programs]] [http://www.slideshare.net/bosc/senger-soaplab-bosc2009 ***SLIDES***] | |
− | + | |- | |
− | + | | 12:00-12:20 | |
− | + | | Pjotr Prins | |
− | + | | [Bio* Update] [[Media:Bosc2009_submission_4.pdf | BioLib: Sharing high performance code between BioPerl, BioPython, BioRuby, R/Bioconductor and BioJAVA]] [http://www.slideshare.net/bosc/prins-bio-lib-bosc-2009 ***SLIDES***] | |
− | + | |- | |
− | + | | 12:20-12:28 | |
− | + | | Steffen Möller | |
− | + | | [OS Software Lightning Talk] [[Media:Bosc2009_submission_30.pdf | Debian adopts and disseminates Bioinformatics Open Source Software]] [http://www.slideshare.net/bosc/moeller-debian-bosc2009 ***SLIDES***] | |
− | + | |- | |
− | + | | '''12:30-2:00''' | |
− | + | | '''Lunch''' | |
− | + | |- | |
− | + | | 2:00-2:20 | |
− | + | | Quinn Snell | |
− | + | | [OS Software] [[Media:Bosc2009_submission_33.pdf | PSODA: Open Source Phylogenetic Search and DNA Analysis]] [http://www.slideshare.net/bosc/snell-psoda-bosc2009 ***SLIDES***] | |
− | + | |- | |
− | + | | 2:20-2:40 | |
− | + | | Finn Drablos | |
− | + | | [Regulatory Genomics] [[Media:Bosc2009_submission_6.pdf | Computational discovery of composite motifs in DNA]] [http://www.slideshare.net/bosc/drablos-composite-motifs-bosc2009 ***SLIDES***] | |
− | + | |- | |
− | + | | 2:40-2:55 | |
− | + | | François Fauteux | |
− | + | | [Regulatory Genomics] [[Media:Bosc2009_submission_40.pdf | SEEDER: PERL MODULES FOR CIS-REGULATORY MOTIF DISCOVERY]] [http://www.slideshare.net/bosc/fauteux-seeder-bosc2009 ***SLIDES***] | |
− | + | |- | |
− | + | | 2:55-3:10 | |
− | + | | Matias Piipari | |
− | + | | [Regulatory Genomics] [[Media:Bosc2009_submission_24.pdf | Large-scale gene regulatory motif discovery and categorisation with NestedMICA]] | |
− | + | |- | |
− | + | | 3:10-3:30 | |
− | + | | Sophie Schbath | |
− | + | | [Regulatory Genomics] [[Media:Bosc2009_submission_38.pdf | R'MES]] [http://www.slideshare.net/bosc/schbath-rmes-bosc2009 ***SLIDES***] | |
+ | |- | ||
+ | | '''3:30-4:00''' | ||
+ | | '''Coffee Break''' | ||
+ | |- | ||
+ | | 4:00-4:15 | ||
+ | | Lonnie Welch | ||
+ | | [Regulatory Genomics] [[Media:Bosc2009_submission_7_21.pdf | Open Source Implementation of Batch-Extraction for Coding and Non-coding Sequences/An Open Source Framework for Bioinformatics Word Enumeration and Scoring]] [http://www.slideshare.net/bosc/welch-wordifier-bosc2009 ***SLIDES***] | ||
+ | |- | ||
+ | | 4:15-4:50 | ||
+ | | Robert Hanmer (moderator), [[Media:Bosc2009_submission_9.pdf | Lonnie Welch]], [[Media:Bosc2009_submission_17.pdf | Aleksi Kallio]] and Jim Procter. | ||
+ | | [Panel Discussion] On the Applicability of Design Patterns for the Bioinformatics Open Source Community [http://www.slideshare.net/bosc/software-patterns-panel-bos2009 Panel ***SLIDES***][http://www.slideshare.net/bosc/kallio-chipster-bosc2009 ***Kallio SLIDES***] | ||
+ | |- | ||
+ | |4:50-5:30 | ||
+ | | [[BOSC_2009/Birds-of-a-Feather | Birds of a Feather]] | ||
+ | |} |
Latest revision as of 18:11, 7 September 2015
- Return to BOSC 2009 main page.
- Click on the talk title to view the individual abstract as a PDF file.
- Click here to download full program in PDF format (2 MB).
- Important Information for Speakers