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Difference between revisions of "BOSC 2008 schedule"
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− | Project Update [http://www.open-bio.org/w/images/e/e3/Antao_Biopython_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/antao-biopython-bosc2008/ **SLIDES**] | + | Project Update 2008 [http://www.open-bio.org/w/images/e/e3/Antao_Biopython_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/antao-biopython-bosc2008/ **SLIDES**] |
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Revision as of 20:19, 10 September 2013
You may also download the entire BOSC program with the schedule and all abstracts as a PDF file (1971KB).
Return to BOSC2008 main page.
Schedule (Day 1)
Friday, July 18
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9:00-9:15 |
Kam Dahlquist (Chair BOSC 2008) Jason Stajich (President O|B|F) |
[welcome] Open Bioinformatics Foundation Update **SLIDES** |
9:15-10:15 |
Julian Lombardi |
[keynote] Croquet: An Open Collaboration Architecture for Scientific Visualization and Simulation |
10:15-10:45 |
Coffee Break
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10:45-11:10 |
Hervé Ménager |
[cyberinfrastructure] Mobyle: a New Full Web Bioinformatics Framework Abstract **SLIDES** |
11:10-11:35 |
Richard Smith |
[cyberinfrastructure] Intermine – Open Source Data Warehouse and Query Interface Abstract **SLIDES** |
11:35-12:00 |
Paul Gordon |
[cyberinfrastructure] Bridging Existing Bioinformatics Tools and Data into Semantic Web Services Abstract **SLIDES** |
12:00-12:25 |
Peter Rice |
[cyberinfrastructure] Soaplab2: More Reliable Sesame Door to Bioinformatics Programs Abstract |
12:30-1:30 |
Lunch
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1:30-1:50 |
Barry Sanders & David Arcoleo |
[cyberinfrastructure] BeeSpace: An Interactive System for Functional Analysis Abstract**SLIDES** (PPT) |
1:50-2:10 |
Andrew Jenkinson
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[cyberinfrastructure] BioDas Project Update Abstract **SLIDES** |
2:10-2:30 |
Kazuharu Arakawa |
[visualization] E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation Abstract **SLIDES** |
2:30-2:50 |
Peter Rice |
[bio*update] EMBOSS: European Molecular Biology Open Software Suite Abstract |
2:50-3:10 |
Michael Heuer
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[bio*update] BioJava Project Update Abstract **SLIDES** |
3:10-3:18 |
Justin Wilson |
[lightning talk] Use the Make Utility for the Maintenance of Complex Bioinformatics Pipelines Abstract **SLIDES** |
3:20-3:28 |
Brian O'Connor |
[lightning talk] SolexaTools: An Open Source Sequence Analysis Framework Abstract **SLIDES** |
3:30-4:00 |
Coffee Break
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4:00-5:30 |
Additional Lightning Talks/Demos/BOFs
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Schedule (Day 2)
Saturday, July 19
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9:00-9:05 |
Kam Dahlquist
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Announcements |
9:05-9:30 |
Mark Wilkinson |
[workflows] Interoperability with BioMoby – Past, Present, and Future Abstract |
9:30-9:55 |
Joshua Orvis |
[workflows] Ergatis: A Web-based Bioinformatics Pipeline Management and Collaborative Development System Abstract |
9:55-10:15 |
Aleksi Kallio |
[workflows] Chipster – User Friendly DNA Microarray Analysis Software Abstract **SLIDES** |
10:15-10:45 |
Coffee Break
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10:45-11:10 |
Jiten Bhagat |
[workflows] myExperiment: Social Software for Sharing Workflows Abstract **SLIDES** |
11:10-11:30 |
Todd Smith |
[workflows] BioHDF: Open Binary File Formats for Large Scale Data Management Abstract **SLIDES** |
11:30-11:50 |
Aaron Kitzmiller |
[open source software] The Open HeliSphereTM Project: True Open Source from the Inventors of True Single Molecule Sequencing Abstract **SLIDES** |
11:50-12:10 |
Ed Lee |
[open source software] Apollo: a Sequence Annotation Editor (with demonstration to follow) Abstract **SLIDES** |
12:30-1:30 |
Lunch
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1:30-1:50 |
Hilmar Lapp |
[bio*update] BioSQL Reloaded: 1.0 Release, PhyloDB Module, and Future Features Abstract **SLIDES** |
1:50-2:10 |
Syed Haider
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[bio*update] EMBRACE – BioMart Developments and Future Abstract **SLIDES** |
2:10-2:30 |
Tiago Antão
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[bio*update] Biopython Project Update 2008 Abstract **SLIDES** |
2:30-2:38 |
Scott Cain
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[lightning talk] GMOD |
2:38-2:46 |
Kannan Vijayan & Dustin Cram
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[lightning talk] Fiesta |
2:46-2:54 |
Ben Faga
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[lightning talk] CMap: A Comparative Viewer **SLIDES** |
2:54-3:02 |
John Greene
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[lightning talk] ERIC: Enteropathogen Resource Information Center **SLIDES** |
3:02-3:10 |
Aaron J. Mackey
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[lightning talk] Off the Beaten Track--Buried Treasure and Hidden Jewels in BioPerl **SLIDES** |
3:10-3:18 |
Saravanamuttu Gnaneshan
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[lightning talk] Web Application Developments with Open Bio in Public health Informatics **SLIDES** |
3:18-3:26 |
Pjotr Prins (in absentia)
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[lightning talk] BioLib **SLIDES** |
3:26-3:30 |
Gregg Helt
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[lightning talk] Exploratory Analysis with DAS/2 and the Integrated Genome Browser (IGB) |
3:30-4:00 |
Coffee Break
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4:00-5:30 |
Lightning Talks/Demos/BOFs [demo] Ergatis - Joshua Orvis [lightning talk] Genographer - Travis Banks **SLIDES** [BOFs] See BOSC_2008/Birds-of-a-Feather |