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BOSC 2014 Schedule

From Open Bioinformatics Foundation
Revision as of 22:45, 25 May 2014 by Nomi (talk) (BOSC Day 1: Friday 11 July 2014)
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This is a working draft. Once finalised, you will also be able to:

- Download schedule as PDF

- Download the complete program.

Pre-BOSC Codefest: July 9-10, 2014

See Codefest 2014 for details.

BOSC

BOSC Day 1: Friday 11 July 2014

Time Topic Speaker, Moderator, or notes
7:30-9:00 Registration Early arrival is recommended as there are usually long lines
9:00-9:15 Introduction and welcome Nomi Harris and/or Peter Cock (Chairs, BOSC 2014)
9:15-10:15 Keynote: A History of Bioinformatics (in the year 2039) C. Titus Brown
10:15-10:45 Coffee Break
10:45-12:30 Session: Genome-scale Data and Beyond Chair: Chris Fields
10:45 [Genome-Scale] ADAM: Fast, Scalable Genomic Analysis Frank Austin Nothaft
11:05 [Genome-Scale] A framework for benchmarking RNA-seq pipelines Rory Kirchner
11:25 [Genome-Scale] New Frontiers of Genome Assembly with SPAdes 3.1 Andrey Prjibelski
11:45 [Genome-Scale] SigSeeker: An Ensemble for Analysis of Epigenetic Data Jens Lichtenberg
12:05 [Genome-Scale] Pathview: an R/Bioconductor package for pathway-based data integration and visualization Weijun Luo
12:30-1:30 Lunch (and poster session)
1:00-2:00 Poster Session and Birds of a Feather (overlapping with lunch) Suggest a BOF topic here!
14:00-15:30 Session: Visualization Chair: Rob Davey
14:00 [Visualization] WormGUIDES: an Interactive Informatic Developmental Atlas at Subcellular Resolution Anthony Santella
14:18 [Visualization] BioJS: an open source standard for biological visualisation Manuel Corpas
14:36 [Visualization] Biodalliance: a fast, extensible genome browser Thomas Down
14:54 [Visualization] TGAC Browser: visualisation solutions for big data in the genomic era Anil S. Thanki
15:12 [Visualization] Explore, analyze, and share genomic data using Integrated Genome Browser Ann Loraine
15:30-16:00 Coffee Break
16:00-17:00 Session: Bioinformatics Open Source Project Updates Chair: Peter Cock
16:00 [Updates] BioMart 0.9 – introducing tools for data analysis and visualisation Arek Kasprzyk
16:12 [Updates] Biocaml: The OCaml Bioinformatics Library Ashish Agarwal
16:24 [Updates] BioRuby and distributed development Pjotr Prins
16:36 [Updates] Biopython Project Update Wibowo Arindrarto
16:48 [Updates] Shared bioinformatics database within Unipro UGENE Ivan Protsyuk
17:00-18:00 Lightning Talks followed by BOFs Suggest a BOF topic here!
19:00 Pay-your-own-way BOSC dinner


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BOSC Day 2: Saturday 12 July 2014

Time Topic Speaker or Moderator
8:45 - 8:50 Announcements Peter Cock and/or Nomi Harris (Chairs, BOSC 2014)
8:50 - 9:00 Codefest 2014 Report Brad Chapman
9:00 - 9:15 Open Bioinformatics Foundation (OBF) update Hilmar Lapp (President, Open Bioinformatics Foundation)
9:15 - 10:15 Keynote: Biomedical Research as an Open Digital Enterprise Philip Bourne
10:15-10:45 Coffee Break
10:45-12:30 Session: Software Interoperability Chair: Raoul Bonnal
10:45 [Interoperability] Use of semantically annotated resources in the Mobyle2 Web Framework Hervé Ménager
11:05 [Interoperability] Towards ubiquitous OWL computing: Simplifying programmatic authoring of and querying with OWL axioms Hilmar Lapp
11:25 [Interoperability] The coming of the age of the platform for bioinformatics? (And how to keep it open-source) Konstantinos Krampis
11:45 [Interoperability] Galaxy as an Extensible Job Execution Platform John Chilton
12:05 [Interoperability] Small tools for Bioinformatics Pjotr Prins
12:30-13:30 Lunch (and posters)
12:30-13:30 Poster Session (Overlapping with Lunch)
13:30-15:30 Session: Open Science and Reproducible Research Chair: Hilmar Lapp
13:30 [Open Science] SEEK for Science: A Data Management Platform which Supports Open and Reproducible Science Stuart Owen
13:55 [Open Science] Arvados: Achieving Computational Reproducibility and Data Provenance in Large-Scale Genomic Analyses Brett Smith
14:20 [Open Science] Integrating Taverna Player into Scratchpads Robert Haines
14;45 [Open Science] Enhancing the Galaxy Experience through Community Involvement Daniel Blankenberg
15:05 [Open Science] Supporting dynamic community developed biological pipelines Brad Chapman
15:30-16:00 Coffee Break
16:00-16:15 Session: Open Science and Reproducible Research (cont.) Chair: Hilmar Lapp
16:00 [Open Science] Open as a strategy for durability, reproducibility and scalability Jonathan Rees
16:15-17:05 Panel: Reproducibility: Rewards and Challenges Moderator: Brad Chapman; Panelists: Phil Bourne, Titus Brown, Varsha Khodiyar, Kay Thaney
17:05-17:10 Presentation of Student Travel Awards Nomi Harris (Co-Chair, BOSC 2014)
17:10-18:00 BOFs Suggest a BOF topic here!

Note the ISMB reception starts at 17:30...


Posters

Shared links to presented posters will be posted here:

Title Presenter
... A.N. Other et al.



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