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Difference between revisions of "BOSC 2008 schedule"

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Arial'>Schedule (Day 2)</span></b></p>
 
Arial'>Schedule (Day 2)</span></b></p>
  
<p class=MsoNormal><o:p>&nbsp;</o:p></p>
+
<p class=MsoNormal></p>
  
 
<table class=MsoTableGrid border=1 cellspacing=0 cellpadding=0
 
<table class=MsoTableGrid border=1 cellspacing=0 cellpadding=0
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   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'>Saturday, July 19<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>Saturday, July 19</span></b></p>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+
   style='font-size:11.0pt'></span></b></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>9:00-9:05<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>9:00-9:05</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>Kam Dahlquist<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Kam Dahlquist</span></p>
   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
   <p class=MsoNormal><span style='font-size:11.0pt'>Announcements<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Announcements</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>9:05-9:30<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>9:05-9:30</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>Mark Wilkinson<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Mark Wilkinson</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Interoperability
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Interoperability
   with BioMoby – Past, Present, and Future<o:p></o:p></span></p>
+
   with BioMoby – Past, Present, and Future</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>9:30-9:55<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>9:30-9:55</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>Joshua Orvis<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Joshua Orvis</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Ergatis: A
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Ergatis: A
 
   Web-based Bioinformatics Pipeline Management and Collaborative Development
 
   Web-based Bioinformatics Pipeline Management and Collaborative Development
   System<o:p></o:p></span></p>
+
   System</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>9:55-10:15<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>9:55-10:15</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>Aleksi Kallio<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Aleksi Kallio</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Chipster – User
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Chipster – User
   Friendly DNA Microarray Analysis Software<o:p></o:p></span></p>
+
   Friendly DNA Microarray Analysis Software</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'>10:15-10:45<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>10:15-10:45</span></b></p>
 
   </td>
 
   </td>
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
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   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'>Coffee Break<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>Coffee Break</span></b></p>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+
   style='font-size:11.0pt'></span></b></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>10:45-11:10<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>10:45-11:10</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
   <p class=MsoNormal><span style='font-size:11.0pt'>Jiten Bhagat<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Jiten Bhagat</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] myExperiment:
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] myExperiment:
   Social Software for Sharing Workflows<o:p></o:p></span></p>
+
   Social Software for Sharing Workflows</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>11:10-11:30<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>11:10-11:30</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
   <p class=MsoNormal><span style='font-size:11.0pt'>Todd Smith<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Todd Smith</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] BioHDF: Open Binary
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] BioHDF: Open Binary
   File Formats for Large Scale Data Management<o:p></o:p></span></p>
+
   File Formats for Large Scale Data Management</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>11:30-11:50<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>11:30-11:50</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
   <p class=MsoNormal><span style='font-size:11.0pt'>Aaron Kitzmiller<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Aaron Kitzmiller</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[open source software] The
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[open source software] The
 
   Open HeliSphere<sup>TM</sup> Project: True Open Source from the Inventors of
 
   Open HeliSphere<sup>TM</sup> Project: True Open Source from the Inventors of
   True Single Molecule Sequencing<o:p></o:p></span></p>
+
   True Single Molecule Sequencing</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>11:50-12:10<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>11:50-12:10</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
   <p class=MsoNormal><span style='font-size:11.0pt'>Ed Lee<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Ed Lee</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[open source software]
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[open source software]
   Apollo: a Sequence Annotation Editor (with demonstration to follow)<o:p></o:p></span></p>
+
   Apollo: a Sequence Annotation Editor (with demonstration to follow)</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'>12:30-1:30<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>12:30-1:30</span></b></p>
 
   </td>
 
   </td>
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
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   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'>Lunch<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>Lunch</span></b></p>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+
   style='font-size:11.0pt'></span></b></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   padding:0in 5.4pt 0in 5.4pt'>
 
   padding:0in 5.4pt 0in 5.4pt'>
   <p class=MsoNormal><span style='font-size:11.0pt'>1:30-1:50<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>1:30-1:50</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>Hilmar Lapp<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Hilmar Lapp</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioSQL
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioSQL
   Reloaded: 1.0 Release, PhyloDB Module, and Future Features<o:p></o:p></span></p>
+
   Reloaded: 1.0 Release, PhyloDB Module, and Future Features</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>1:50-2:10<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>1:50-2:10</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>Syed Haider<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Syed Haider</span></p>
   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBRACE –
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBRACE –
   BioMart Developments and Future<o:p></o:p></span></p>
+
   BioMart Developments and Future</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>2:10-2:30<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>2:10-2:30</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>Tiago Antão <o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Tiago Antão </span></p>
   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] Biopython
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] Biopython
   Project Update<o:p></o:p></span></p>
+
   Project Update</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
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   <p class=MsoNormal><span style='font-size:11.0pt'>2:30-3:30<o:p></o:p></span></p>
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   <p class=MsoNormal><span style='font-size:11.0pt'>2:30-3:30</span></p>
 
   </td>
 
   </td>
 
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   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
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   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs</span></p>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>See
 
   <p class=MsoNormal><span style='font-size:11.0pt'>See
   &lt;http://www.open-bio.org/wiki/BOSC_2008_schedule&gt; for updated listings<o:p></o:p></span></p>
+
   &lt;http://www.open-bio.org/wiki/BOSC_2008_schedule&gt; for updated listings</span></p>
 
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   style='font-size:11.0pt'>3:30-4:00<o:p></o:p></span></b></p>
+
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   </td>
 
   </td>
 
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   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'>Coffee Break<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>Coffee Break</span></b></p>
 
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   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
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   </td>
 
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   <p class=MsoNormal><span style='font-size:11.0pt'>4:00-5:30<o:p></o:p></span></p>
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   </td>
 
   </td>
 
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   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs</span></p>
   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
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   </td>
 
   </td>
 
  </tr>
 
  </tr>
 
</table>
 
</table>

Revision as of 17:23, 9 June 2008

Schedule (Day 1)

Friday, July18

9:00-9:15

Kam Dahlquist (Chair BOSC 2008)

Jason Stajich (President O|B|F)

[welcome] Open Bioinformatics Foundation Update

9:15-10:15

Julian Lombardi

[keynote] Croquet: An Open Collaboration Architecture for Scientific Visualization and Simulation

10:15-10:45

Coffee Break

10:45-11:05

Hervé Ménager

[cyberinfrastructure] Mobyle: a New Full Web Bioinformatics Framework

11:05-11:30

Richard Smith

[cyberinfrastructure] Intermine – Open Source Data Warehouse and Query Interface

11:30-12:05

Paul Gordon

[cyberinfrastructure] Bridging Existing Bioinformatics Tools and Data into Semantic Web Services

12:05-12:25

Peter Rice

[cyberinfrastructure] Soaplab2: More Reliable Sesame Door to Bioinformatics Programs

12:30-1:30

Lunch

1:30-1:50

Barry Sanders & David Arcoleo

[cyberinfrastructure] BeeSpace:  An Interactive System for Functional Analysis

1:50-2:10

Andrew Jenkinson

[cyberinfrastructure] BioDas Project Update

2:10-2:30

Kazuharu Arakawa

[visualization] E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation

2:30-2:50

Peter Rice

[bio*update] EMBOSS: European Molecular Biology Open Software Suite

2:50-3:10

Michael Heuer

[bio*update] BioJava Project Update

3:10-3:15

Justin Wilson

[lightning talk] Use the Make Utility for the Maintenance of Complex Bioinformatics Pipelines

3:15-3:30

Additional Lightning Talks/Demos/Birds of a Feather

See <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings

3:30-4:00

Coffee Break

4:00-5:30

Lightning Talks/Demos/BOFs


Schedule (Day 2)

Saturday, July 19

9:00-9:05

Kam Dahlquist

Announcements

9:05-9:30

Mark Wilkinson

[workflows] Interoperability with BioMoby – Past, Present, and Future

9:30-9:55

Joshua Orvis

[workflows] Ergatis: A Web-based Bioinformatics Pipeline Management and Collaborative Development System

9:55-10:15

Aleksi Kallio

[workflows] Chipster – User Friendly DNA Microarray Analysis Software

10:15-10:45

Coffee Break

10:45-11:10

Jiten Bhagat

[workflows] myExperiment: Social Software for Sharing Workflows

11:10-11:30

Todd Smith

[workflows] BioHDF: Open Binary File Formats for Large Scale Data Management

11:30-11:50

Aaron Kitzmiller

[open source software] The Open HeliSphereTM Project: True Open Source from the Inventors of True Single Molecule Sequencing

11:50-12:10

Ed Lee

[open source software] Apollo: a Sequence Annotation Editor (with demonstration to follow)

12:30-1:30

Lunch

1:30-1:50

Hilmar Lapp

[bio*update] BioSQL Reloaded: 1.0 Release, PhyloDB Module, and Future Features

1:50-2:10

Syed Haider

[bio*update] EMBRACE – BioMart Developments and Future

2:10-2:30

Tiago Antão

[bio*update] Biopython Project Update

2:30-3:30

Lightning Talks/Demos/BOFs

See <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings

3:30-4:00

Coffee Break

4:00-5:30

Lightning Talks/Demos/BOFs