Difference between revisions of "BOSC 2008 schedule"

Latest revision as of 14:17, 7 September 2015

You may also download the entire BOSC program with the schedule and all abstracts as a PDF file (1971KB).

Return to BOSC2008 main page.

Schedule (Day 1)

Friday, July 18
9:00-9:15	Kam Dahlquist (Chair BOSC 2008) Jason Stajich (President OBF)	[welcome] Open Bioinformatics Foundation Update SLIDES
9:15-10:15	Julian Lombardi	[keynote] Croquet: An Open Collaboration Architecture for Scientific Visualization and Simulation
10:15-10:45	Coffee Break
10:45-11:10	Hervé Ménager	[cyberinfrastructure] Mobyle: a New Full Web Bioinformatics Framework Abstract SLIDES
11:10-11:35	Richard Smith	[cyberinfrastructure] Intermine – Open Source Data Warehouse and Query Interface Abstract SLIDES
11:35-12:00	Paul Gordon	[cyberinfrastructure] Bridging Existing Bioinformatics Tools and Data into Semantic Web Services Abstract SLIDES
12:00-12:25	Peter Rice	[cyberinfrastructure] Soaplab2: More Reliable Sesame Door to Bioinformatics Programs Abstract
12:30-1:30	Lunch
1:30-1:50	Barry Sanders & David Arcoleo	[cyberinfrastructure] BeeSpace: An Interactive System for Functional Analysis Abstract SLIDES (PPT)
1:50-2:10	Andrew Jenkinson	[cyberinfrastructure] BioDas Project Update Abstract SLIDES
2:10-2:30	Kazuharu Arakawa	[visualization] E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation Abstract SLIDES
2:30-2:50	Peter Rice	[bio*update] EMBOSS: European Molecular Biology Open Software Suite Abstract
2:50-3:10	Michael Heuer	[bioupdate] BioJava Project Update Abstract SLIDES*
3:10-3:18	Justin Wilson	[lightning talk] Use the Make Utility for the Maintenance of Complex Bioinformatics Pipelines Abstract SLIDES
3:20-3:28	Brian O'Connor	[lightning talk] SolexaTools: An Open Source Sequence Analysis Framework Abstract SLIDES
3:30-4:00	Coffee Break
4:00-5:30	Additional Lightning Talks/Demos/BOFs

Schedule (Day 2)

Saturday, July 19
9:00-9:05	Kam Dahlquist	Announcements
9:05-9:30	Mark Wilkinson	[workflows] Interoperability with BioMoby – Past, Present, and Future Abstract
9:30-9:55	Joshua Orvis	[workflows] Ergatis: A Web-based Bioinformatics Pipeline Management and Collaborative Development System Abstract
9:55-10:15	Aleksi Kallio	[workflows] Chipster – User Friendly DNA Microarray Analysis Software Abstract SLIDES
10:15-10:45	Coffee Break
10:45-11:10	Jiten Bhagat	[workflows] myExperiment: Social Software for Sharing Workflows Abstract SLIDES
11:10-11:30	Todd Smith	[workflows] BioHDF: Open Binary File Formats for Large Scale Data Management Abstract SLIDES
11:30-11:50	Aaron Kitzmiller	[open source software] The Open HeliSphere^TM Project: True Open Source from the Inventors of True Single Molecule Sequencing Abstract SLIDES
11:50-12:10	Ed Lee	[open source software] Apollo: a Sequence Annotation Editor (with demonstration to follow) Abstract SLIDES
12:30-1:30	Lunch
1:30-1:50	Hilmar Lapp	[bioupdate] BioSQL Reloaded: 1.0 Release, PhyloDB Module, and Future Features Abstract SLIDES*
1:50-2:10	Syed Haider	[bioupdate] EMBRACE – BioMart Developments and Future Abstract SLIDES*
2:10-2:30	Tiago Antão	[bioupdate] Biopython Project Update 2008 Abstract SLIDES*
2:30-2:38	Scott Cain	[lightning talk] GMOD
2:38-2:46	Kannan Vijayan & Dustin Cram	[lightning talk] Fiesta
2:46-2:54	Ben Faga	[lightning talk] CMap: A Comparative Viewer SLIDES
2:54-3:02	John Greene	[lightning talk] ERIC: Enteropathogen Resource Information Center SLIDES
3:02-3:10	Aaron J. Mackey	[lightning talk] Off the Beaten Track--Buried Treasure and Hidden Jewels in BioPerl SLIDES
3:10-3:18	Saravanamuttu Gnaneshan	[lightning talk] Web Application Developments with Open Bio in Public health Informatics SLIDES
3:18-3:26	Pjotr Prins (in absentia)	[lightning talk] BioLib SLIDES
3:26-3:30	Gregg Helt	[lightning talk] Exploratory Analysis with DAS/2 and the Integrated Genome Browser (IGB)
3:30-4:00	Coffee Break
4:00-5:30	Lightning Talks/Demos/BOFs [demo] Ergatis - Joshua Orvis [lightning talk] Genographer - Travis Banks SLIDES [BOFs] See BOSC_2008/Birds-of-a-Feather

Return to BOSC2008 main page.

Difference between revisions of "BOSC 2008 schedule"

Latest revision as of 14:17, 7 September 2015

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@@ Line 1: / Line 1: @@
+You may also download the entire BOSC program with the schedule and all abstracts as a [http://www.open-bio.org/w/images/b/b6/BOSC2008_program.pdf PDF file] (1971KB).
+Return to [[BOSC_2008 | BOSC2008]] main page.
 <div class=Section1>
@@ Line 13: / Line 17: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'>Friday, July18</span></b></p>
+   style='font-size:11.0pt'>Friday, July 18</span></b></p>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
    style='font-size:11.0pt'></span></b></p>
@@ Line 31: / Line 35: @@
 )</span></p>
    <p class=MsoNormal><span style='font-size:11.0pt'>Jason Stajich (President
-   O|B|F)</span></p>
+   OBF)</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 38: / Line 42: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[welcome] Open
-   Bioinformatics Foundation Update</span></p>
+   Bioinformatics Foundation Update [http://www.slideshare.net/bosc_2008/introduction-bosc2008/ **SLIDES**]</span></p>
    </td>
   </tr>
@@ Line 84: / Line 88: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>10:45-11:05</span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>10:45-11:10</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 97: / Line 101: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
-   Mobyle: a New Full Web Bioinformatics Framework</span></p>
+   Mobyle: a New Full Web Bioinformatics Framework [http://www.open-bio.org/w/images/c/c7/Menager_Mobyle_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/menager-mobyle-bosc2008/ **SLIDES**]</span></p>
    </td>
   </tr>
@@ Line 104: / Line 108: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>11:05-11:30<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>11:10-11:35</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 110: / Line 114: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Richard Smith<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Richard Smith</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 117: / Line 121: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
-   Intermine – Open Source Data Warehouse and Query Interface<o:p></o:p></span></p>
+   Intermine – Open Source Data Warehouse and Query Interface [http://www.open-bio.org/w/images/e/e5/Smith_R_Intermine_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/smith-inter-mine-bosc2008/ **SLIDES**]
+</span></p>
    </td>
   </tr>
@@ Line 124: / Line 129: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>11:30-12:05<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>11:35-12:00</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 130: / Line 135: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Paul Gordon<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Paul Gordon</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 137: / Line 142: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] Bridging
-   Existing Bioinformatics Tools and Data into Semantic Web Services<o:p></o:p></span></p>
+   Existing Bioinformatics Tools and Data into Semantic Web Services [http://www.open-bio.org/w/images/6/69/Gordon_SemanticWeb_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/gordon-semantic-web-2008/ **SLIDES**]
+</span></p>
    </td>
   </tr>
@@ Line 144: / Line 150: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>12:05-12:25<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>12:00-12:25</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 150: / Line 156: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Peter Rice<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Peter Rice</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 157: / Line 163: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
-   Soaplab2: More Reliable Sesame Door to Bioinformatics Programs<o:p></o:p></span></p>
+   Soaplab2: More Reliable Sesame Door to Bioinformatics Programs [http://www.open-bio.org/w/images/3/3c/Rice_Soaplab2_abstract.pdf Abstract]</span></p>
    </td>
   </tr>
@@ Line 165: / Line 171: @@
    padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'>12:30-1:30<o:p></o:p></span></b></p>
+   style='font-size:11.0pt'>12:30-1:30</span></b></p>
    </td>
    <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
@@ Line 172: / Line 178: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'>Lunch<o:p></o:p></span></b></p>
+   style='font-size:11.0pt'>Lunch</span></b></p>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+   style='font-size:11.0pt'></span></b></p>
    </td>
   </tr>
@@ Line 181: / Line 187: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>1:30-1:50<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>1:30-1:50</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 187: / Line 193: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Barry Sanders &amp; David Arcoleo<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Barry Sanders &amp; David Arcoleo</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 194: / Line 200: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
-   BeeSpace:<span style='mso-spacerun:yes'>  </span>An Interactive System for
+   BeeSpace:<span style='mso-spacerun:yes'>  </span>An Interactive System for
-   Functional Analysis<o:p></o:p></span></p>
+   Functional Analysis [http://www.open-bio.org/w/images/2/27/Sanders_Arcoleo_BeeSpace_abstract.pdf Abstract][http://www.beespace.uiuc.edu/files/BeeSpaceBOSC2008_v3.ppt **SLIDES** (PPT)]</span></p>
    </td>
   </tr>
@@ Line 202: / Line 208: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>1:50-2:10<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>1:50-2:10</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 208: / Line 214: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Andrew Jenkinson<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Andrew Jenkinson</span></p>
-   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 216: / Line 222: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
-   BioDas Project Update<o:p></o:p></span></p>
+   BioDas Project Update [http://www.open-bio.org/w/images/6/6c/Jenkinson_BioDas_abstract.pdf Abstract]  [http://www.slideshare.net/bosc_2008/andy-jenkinson-bosc-das-2008/ **SLIDES**]
+</span></p>
    </td>
   </tr>
@@ Line 223: / Line 230: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>2:10-2:30<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>2:10-2:30</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 229: / Line 236: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Kazuharu Arakawa<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Kazuharu Arakawa</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 236: / Line 243: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[visualization] E-Cell 3D: 3-Dimensional
-   Visualization of Dynamic Cell Simulation<o:p></o:p></span></p>
+   Visualization of Dynamic Cell Simulation [http://www.open-bio.org/w/images/2/20/Arakawa_E-Cell3D_abstract.pdf Abstract] [http://www.g-language.org/data/gaou/presentation/BOSC08-ECell3D.pdf **SLIDES**]</span></p>
    </td>
   </tr>
@@ Line 243: / Line 250: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>2:30-2:50<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>2:30-2:50</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 249: / Line 256: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Peter Rice<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Peter Rice</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 256: / Line 263: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBOSS:
-   European Molecular Biology Open Software Suite<o:p></o:p></span></p>
+   European Molecular Biology Open Software Suite [http://www.open-bio.org/w/images/c/ca/Rice_EMBOSS_abstract.pdf Abstract]</span></p>
    </td>
   </tr>
@@ Line 263: / Line 270: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>2:50-3:10<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>2:50-3:10</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 269: / Line 276: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Michael Heuer<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Michael Heuer</span></p>
-   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 277: / Line 284: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioJava
-   Project Update<o:p></o:p></span></p>
+   Project Update [http://www.open-bio.org/w/images/1/10/Heuer_BioJava_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/heuer-bio-java-bosc2008/ **SLIDES**]
+</span></p>
    </td>
   </tr>
@@ Line 284: / Line 292: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>3:10-3:15<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>3:10-3:18</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 290: / Line 298: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Justin Wilson<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Justin Wilson</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 297: / Line 305: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Use the
-   Make Utility for the Maintenance of Complex Bioinformatics Pipelines<o:p></o:p></span></p>
+   Make Utility for the Maintenance of Complex Bioinformatics Pipelines [http://www.open-bio.org/w/images/a/a9/Wilson_Make_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/wilson-make-bosc2008/ **SLIDES**]
+</span></p>
    </td>
   </tr>
- <tr style='mso-yfti-irow:15'>
+<tr style='mso-yfti-irow:14'>
    <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>3:15-3:30<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>3:20-3:28</span></p>
    </td>
-   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
+   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
-  border-left:none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>Brian O'Connor</span></p>
+  </td>
+  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Additional Lightning
+   <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] SolexaTools: An Open Source Sequence Analysis Framework [http://www.open-bio.org/w/images/6/63/OConnor_SolexaTools_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/o-connor-solexa-tools-bosc2008/ **SLIDES**]</span></p>
-  Talks/Demos/Birds of a Feather<o:p></o:p></span></p>
-  <p class=MsoNormal><span style='font-size:11.0pt'>See
-  &lt;http://www.open-bio.org/wiki/BOSC_2008_schedule&gt; for updated listings<o:p></o:p></span></p>
    </td>
   </tr>
   <tr style='mso-yfti-irow:16'>
    <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
@@ Line 321: / Line 333: @@
    padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'>3:30-4:00<o:p></o:p></span></b></p>
+   style='font-size:11.0pt'>3:30-4:00</span></b></p>
    </td>
    <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
@@ Line 328: / Line 340: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'>Coffee Break<o:p></o:p></span></b></p>
+   style='font-size:11.0pt'>Coffee Break</span></b></p>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+   style='font-size:11.0pt'></span></b></p>
    </td>
   </tr>
@@ Line 337: / Line 349: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>4:00-5:30<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>4:00-5:30</span></p>
    </td>
    <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
@@ Line 343: / Line 355: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Additional Lightning Talks/Demos/BOFs</span></p>
-   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
    </td>
   </tr>
 </table>
-<p class=MsoNormal><o:p>&nbsp;</o:p></p>
+<p class=MsoNormal></p>
 <span style='font-size:12.0pt;font-family:"Times New Roman";mso-fareast-font-family:
@@ Line 358: / Line 370: @@
 <p class=MsoNormal style='margin-left:.25in;text-indent:-.25in'><b
 style='mso-bidi-font-weight:normal'><span style='font-size:16.0pt;font-family:
-Arial'>2.<span style='mso-tab-count:1'> </span>Schedule (Day 2)<o:p></o:p></span></b></p>
+Arial'>Schedule (Day 2)</span></b></p>
-<p class=MsoNormal><o:p>&nbsp;</o:p></p>
+<p class=MsoNormal></p>
 <table class=MsoTableGrid border=1 cellspacing=0 cellpadding=0
@@ Line 370: / Line 382: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'>Saturday, July 19<o:p></o:p></span></b></p>
+   style='font-size:11.0pt'>Saturday, July 19</span></b></p>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+   style='font-size:11.0pt'></span></b></p>
    </td>
   </tr>
@@ Line 379: / Line 391: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>9:00-9:05<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>9:00-9:05</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 385: / Line 397: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Kam Dahlquist<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Kam Dahlquist</span></p>
-   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 392: / Line 404: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Announcements<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Announcements</span></p>
    </td>
   </tr>
@@ Line 399: / Line 411: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>9:05-9:30<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>9:05-9:30</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 405: / Line 417: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Mark Wilkinson<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Mark Wilkinson</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 412: / Line 424: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Interoperability
-   with BioMoby – Past, Present, and Future<o:p></o:p></span></p>
+   with BioMoby – Past, Present, and Future [http://www.open-bio.org/w/images/d/da/Wilkinson_BioMoby_abstract.pdf Abstract]</span></p>
    </td>
   </tr>
@@ Line 419: / Line 431: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>9:30-9:55<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>9:30-9:55</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 425: / Line 437: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Joshua Orvis<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Joshua Orvis</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 433: / Line 445: @@
    <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Ergatis: A
    Web-based Bioinformatics Pipeline Management and Collaborative Development
-   System<o:p></o:p></span></p>
+   System [http://www.open-bio.org/w/images/5/59/Orvis_Ergatis_abstract.pdf Abstract]</span></p>
    </td>
   </tr>
@@ Line 440: / Line 452: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>9:55-10:15<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>9:55-10:15</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 446: / Line 458: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Aleksi Kallio<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Aleksi Kallio</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 453: / Line 465: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Chipster – User
-   Friendly DNA Microarray Analysis Software<o:p></o:p></span></p>
+   Friendly DNA Microarray Analysis Software [http://www.open-bio.org/w/images/7/7e/Kallio_Chipster_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/kallio-chipster-bosc2008/ **SLIDES**]</span></p>
    </td>
   </tr>
@@ Line 461: / Line 473: @@
    padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'>10:15-10:45<o:p></o:p></span></b></p>
+   style='font-size:11.0pt'>10:15-10:45</span></b></p>
    </td>
    <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
@@ Line 468: / Line 480: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'>Coffee Break<o:p></o:p></span></b></p>
+   style='font-size:11.0pt'>Coffee Break</span></b></p>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+   style='font-size:11.0pt'></span></b></p>
    </td>
   </tr>
@@ Line 477: / Line 489: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>10:45-11:10<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>10:45-11:10</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 483: / Line 495: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Jiten Bhagat<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Jiten Bhagat</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 490: / Line 502: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] myExperiment:
-   Social Software for Sharing Workflows<o:p></o:p></span></p>
+   Social Software for Sharing Workflows [http://www.open-bio.org/w/images/7/75/Bhagat_myExperiment_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/bhagat-myexperiment-bosc2008/ **SLIDES**]</span></p>
    </td>
   </tr>
@@ Line 497: / Line 509: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>11:10-11:30<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>11:10-11:30</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 503: / Line 515: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Todd Smith<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Todd Smith</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 510: / Line 522: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] BioHDF: Open Binary
-   File Formats for Large Scale Data Management<o:p></o:p></span></p>
+   File Formats for Large Scale Data Management [http://www.open-bio.org/w/images/2/22/Smith_T_BioHDF_Abstract_revised.pdf Abstract] [http://www.slideshare.net/bosc_2008/smith-t-bio-hdf-bosc2008/ **SLIDES**]</span></p>
    </td>
   </tr>
@@ Line 517: / Line 529: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>11:30-11:50<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>11:30-11:50</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 523: / Line 535: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Aaron Kitzmiller<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Aaron Kitzmiller</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 531: / Line 543: @@
    <p class=MsoNormal><span style='font-size:11.0pt'>[open source software] The
    Open HeliSphere<sup>TM</sup> Project: True Open Source from the Inventors of
-   True Single Molecule Sequencing<o:p></o:p></span></p>
+   True Single Molecule Sequencing [http://www.open-bio.org/w/images/f/fb/Kitzmiller_OpenHeliSphere_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/kitzmiller-openhelisphereproject-bosc2008/ **SLIDES**]</span></p>
    </td>
   </tr>
@@ Line 538: / Line 550: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>11:50-12:10<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>11:50-12:10</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 544: / Line 556: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Ed Lee<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Ed Lee</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 551: / Line 563: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[open source software]
-   Apollo: a Sequence Annotation Editor (with demonstration to follow)<o:p></o:p></span></p>
+   Apollo: a Sequence Annotation Editor (with demonstration to follow) [http://www.open-bio.org/w/images/3/3a/Lee_Apollo_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/lee-apollo-bosc2008/ **SLIDES**]</span></p>
    </td>
   </tr>
@@ Line 559: / Line 571: @@
    padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'>12:30-1:30<o:p></o:p></span></b></p>
+   style='font-size:11.0pt'>12:30-1:30</span></b></p>
    </td>
    <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
@@ Line 566: / Line 578: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'>Lunch<o:p></o:p></span></b></p>
+   style='font-size:11.0pt'>Lunch</span></b></p>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+   style='font-size:11.0pt'></span></b></p>
    </td>
   </tr>
@@ Line 575: / Line 587: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>1:30-1:50<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>1:30-1:50</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 581: / Line 593: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Hilmar Lapp<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Hilmar Lapp</span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 588: / Line 600: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioSQL
-   Reloaded: 1.0 Release, PhyloDB Module, and Future Features<o:p></o:p></span></p>
+   Reloaded: 1.0 Release, PhyloDB Module, and Future Features [http://www.open-bio.org/w/images/3/3b/Lapp_BioSQL_abstract.pdf Abstract] [http://www.slideshare.net/hlapp/lapp-biosql-bosc2008 **SLIDES**]</span></p>
    </td>
   </tr>
@@ Line 595: / Line 607: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>1:50-2:10<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>1:50-2:10</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 601: / Line 613: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Syed Haider<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Syed Haider</span></p>
-   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 609: / Line 621: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBRACE –
-   BioMart Developments and Future<o:p></o:p></span></p>
+   BioMart Developments and Future [http://www.open-bio.org/w/images/1/10/Haider_EMBRACE_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/haider-embrace-bosc2008/ **SLIDES**]</span></p>
    </td>
   </tr>
@@ Line 616: / Line 628: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>2:10-2:30<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>2:10-2:30</span></p>
    </td>
    <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
@@ Line 622: / Line 634: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Tiago Antão <o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Tiago Antão </span></p>
-   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
    </td>
    <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
@@ Line 630: / Line 642: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
    <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] Biopython
-   Project Update<o:p></o:p></span></p>
+   Project Update 2008 [http://www.open-bio.org/w/images/e/e3/Antao_Biopython_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/antao-biopython-bosc2008/ **SLIDES**]
+</span></p>
+  </td>
+ </tr>
+ <tr style='mso-yfti-irow:13'>
+  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
+  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
+  padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>2:30-2:38</span></p>
+  </td>
+  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>Scott Cain</span></p>
+  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
+  </td>
+  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] [http://gmod.org/wiki/index.php/Community_Annotation_System GMOD]</span></p>
    </td>
   </tr>
-  <tr style='mso-yfti-irow:14'>
+  <tr style='mso-yfti-irow:13'>
+  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
+  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
+  padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>2:38-2:46</span></p>
+  </td>
+  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>Kannan Vijayan & Dustin Cram</span></p>
+  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
+  </td>
+  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Fiesta</span></p>
+  </td>
+ </tr>
+ <tr style='mso-yfti-irow:13'>
+  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
+  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
+  padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>2:46-2:54</span></p>
+  </td>
+  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>Ben Faga</span></p>
+  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
+  </td>
+  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] CMap: A Comparative Viewer [http://www.slideshare.net/bosc_2008/faga-c-map-bosc2008/ **SLIDES**]
+</span></p>
+  </td>
+ </tr>
+  <tr style='mso-yfti-irow:13'>
+  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
+  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
+  padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>2:54-3:02</span></p>
+  </td>
+  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>John Greene</span></p>
+  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
+  </td>
+  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] ERIC: Enteropathogen Resource Information Center [http://www.slideshare.net/bosc_2008/greene-bosc2008/ **SLIDES**]</span></p>
+  </td>
+ </tr>
+  <tr style='mso-yfti-irow:13'>
+  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
+  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
+  padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>3:02-3:10</span></p>
+  </td>
+  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>Aaron J. Mackey</span></p>
+  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
+  </td>
+  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Off the Beaten Track--Buried Treasure and Hidden Jewels in BioPerl [http://www.slideshare.net/bosc_2008/mackey-bio-perl-bosc2008/ **SLIDES**]</span></p>
+  </td>
+ </tr>
+  <tr style='mso-yfti-irow:13'>
+  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
+  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
+  padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>3:10-3:18</span></p>
+  </td>
+  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>Saravanamuttu Gnaneshan</span></p>
+  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
+  </td>
+  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Web Application Developments with Open Bio in Public health Informatics [http://www.slideshare.net/bosc_2008/gnaneshan-public-health-bosc2008/ **SLIDES**]</span></p>
+  </td>
+ </tr>
+  <tr style='mso-yfti-irow:13'>
+  <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
+  border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
+  padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>3:18-3:26</span></p>
+  </td>
+  <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>Pjotr Prins (''in absentia'')</span></p>
+  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
+  </td>
+  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] BioLib [http://www.slideshare.net/bosc_2008/prins-bio-lib-bosc2008/ **SLIDES**]</span></p>
+  </td>
+ </tr>
+<tr style='mso-yfti-irow:13'>
    <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>2:30-3:30<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>3:26-3:30</span></p>
    </td>
-   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
+   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
-  border-left:none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
+  mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
+  mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
+  <p class=MsoNormal><span style='font-size:11.0pt'>Gregg Helt</span></p>
+  <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
+  </td>
+  <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
+  none;border-bottom:solid windowtext 1.0pt;border-right:solid windowtext 1.0pt;
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Exploratory Analysis with DAS/2 and the Integrated Genome Browser (IGB)</span></p>
-  <p class=MsoNormal><span style='font-size:11.0pt'>See
-  &lt;http://www.open-bio.org/wiki/BOSC_2008_schedule&gt; for updated listings<o:p></o:p></span></p>
    </td>
   </tr>
- <tr style='mso-yfti-irow:15;height:4.45pt'>
+<tr style='mso-yfti-irow:15;height:4.45pt'>
    <td width=95 valign=top style='width:71.4pt;border:solid windowtext 1.0pt;
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt;height:4.45pt'>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'>3:30-4:00<o:p></o:p></span></b></p>
+   style='font-size:11.0pt'>3:30-4:00</span></b></p>
    </td>
    <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
@@ Line 660: / Line 819: @@
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt;height:4.45pt'>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'>Coffee Break<o:p></o:p></span></b></p>
+   style='font-size:11.0pt'>Coffee Break</span></b></p>
    <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
-   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
+   style='font-size:11.0pt'></span></b></p>
    </td>
   </tr>
@@ Line 669: / Line 828: @@
    border-top:none;mso-border-top-alt:solid windowtext .5pt;mso-border-alt:solid windowtext .5pt;
    padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>4:00-5:30<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>4:00-5:30</span></p>
    </td>
    <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
@@ Line 675: / Line 834: @@
    mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt;
    mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
-   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs<o:p></o:p></span></p>
+   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs</span></p>
-   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+  <p class=MsoNormal><span style='font-size:11.0pt'>[demo] Ergatis - Joshua Orvis</span></p>
-  </td>
+   <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Genographer - Travis Banks [http://www.slideshare.net/bosc_2008/banks-genographer-bosc2008/ **SLIDES**]
+</span></p>
+<p class=MsoNormal><span style='font-size:11.0pt'>[BOFs] See [[BOSC_2008/Birds-of-a-Feather]]</span></p>
+</td>
   </tr>
 </table>
+Return to [[BOSC_2008 | BOSC2008]] main page.