| Please visit our ***NEW*** OBF/BOSC website: https://www.open-bio.org/ |
-
Difference between revisions of "BOSC 2008 schedule"
From Open Bioinformatics Foundation
(Change inline use of O|B|F to OBF) |
|||
| (27 intermediate revisions by 3 users not shown) | |||
| Line 35: | Line 35: | ||
2008)</span></p> | 2008)</span></p> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>Jason Stajich (President | <p class=MsoNormal><span style='font-size:11.0pt'>Jason Stajich (President | ||
| − | + | OBF)</span></p> | |
</td> | </td> | ||
<td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | <td width=407 valign=top style='width:305.4pt;border-top:none;border-left: | ||
| Line 42: | Line 42: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[welcome] Open | <p class=MsoNormal><span style='font-size:11.0pt'>[welcome] Open | ||
| − | Bioinformatics Foundation Update</span></p> | + | Bioinformatics Foundation Update [http://www.slideshare.net/bosc_2008/introduction-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 101: | Line 101: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | ||
| − | Mobyle: a New Full Web Bioinformatics Framework [http://www.open-bio.org/w/images/c/c7/Menager_Mobyle_abstract.pdf Abstract]</span></p> | + | Mobyle: a New Full Web Bioinformatics Framework [http://www.open-bio.org/w/images/c/c7/Menager_Mobyle_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/menager-mobyle-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 121: | Line 121: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | ||
| − | Intermine – Open Source Data Warehouse and Query Interface [http://www.open-bio.org/w/images/e/e5/Smith_R_Intermine_abstract.pdf Abstract]</span></p> | + | Intermine – Open Source Data Warehouse and Query Interface [http://www.open-bio.org/w/images/e/e5/Smith_R_Intermine_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/smith-inter-mine-bosc2008/ **SLIDES**] |
| + | </span></p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 141: | Line 142: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] Bridging | <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] Bridging | ||
| − | Existing Bioinformatics Tools and Data into Semantic Web Services [http://www.open-bio.org/w/images/6/69/Gordon_SemanticWeb_abstract.pdf Abstract]</span></p> | + | Existing Bioinformatics Tools and Data into Semantic Web Services [http://www.open-bio.org/w/images/6/69/Gordon_SemanticWeb_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/gordon-semantic-web-2008/ **SLIDES**] |
| + | </span></p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 199: | Line 201: | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | ||
BeeSpace:<span style='mso-spacerun:yes'> </span>An Interactive System for | BeeSpace:<span style='mso-spacerun:yes'> </span>An Interactive System for | ||
| − | Functional Analysis [http://www.open-bio.org/w/images/2/27/Sanders_Arcoleo_BeeSpace_abstract.pdf Abstract]</span></p> | + | Functional Analysis [http://www.open-bio.org/w/images/2/27/Sanders_Arcoleo_BeeSpace_abstract.pdf Abstract][http://www.beespace.uiuc.edu/files/BeeSpaceBOSC2008_v3.ppt **SLIDES** (PPT)]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 220: | Line 222: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] | ||
| − | BioDas Project Update [http://www.open-bio.org/w/images/6/6c/Jenkinson_BioDas_abstract.pdf Abstract]</span></p> | + | BioDas Project Update [http://www.open-bio.org/w/images/6/6c/Jenkinson_BioDas_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/andy-jenkinson-bosc-das-2008/ **SLIDES**] |
| + | </span></p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 240: | Line 243: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[visualization] E-Cell 3D: 3-Dimensional | <p class=MsoNormal><span style='font-size:11.0pt'>[visualization] E-Cell 3D: 3-Dimensional | ||
| − | Visualization of Dynamic Cell Simulation [http://www.open-bio.org/w/images/2/20/Arakawa_E-Cell3D_abstract.pdf Abstract]</span></p> | + | Visualization of Dynamic Cell Simulation [http://www.open-bio.org/w/images/2/20/Arakawa_E-Cell3D_abstract.pdf Abstract] [http://www.g-language.org/data/gaou/presentation/BOSC08-ECell3D.pdf **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 281: | Line 284: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioJava | <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioJava | ||
| − | Project Update [http://www.open-bio.org/w/images/1/10/Heuer_BioJava_abstract.pdf Abstract]</span></p> | + | Project Update [http://www.open-bio.org/w/images/1/10/Heuer_BioJava_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/heuer-bio-java-bosc2008/ **SLIDES**] |
| + | </span></p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 301: | Line 305: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Use the | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Use the | ||
| − | Make Utility for the Maintenance of Complex Bioinformatics Pipelines [http://www.open-bio.org/w/images/a/a9/Wilson_Make_abstract.pdf Abstract]</span></p> | + | Make Utility for the Maintenance of Complex Bioinformatics Pipelines [http://www.open-bio.org/w/images/a/a9/Wilson_Make_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/wilson-make-bosc2008/ **SLIDES**] |
| + | </span></p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 320: | Line 325: | ||
mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
| − | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] SolexaTools: An Open Source Sequence Analysis Framework [http://www.open-bio.org/w/images/6/63/OConnor_SolexaTools_abstract.pdf Abstract]</span></p> | + | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] SolexaTools: An Open Source Sequence Analysis Framework [http://www.open-bio.org/w/images/6/63/OConnor_SolexaTools_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/o-connor-solexa-tools-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 460: | Line 465: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Chipster – User | <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] Chipster – User | ||
| − | Friendly DNA Microarray Analysis Software [http://www.open-bio.org/w/images/7/7e/Kallio_Chipster_abstract.pdf Abstract]</span></p> | + | Friendly DNA Microarray Analysis Software [http://www.open-bio.org/w/images/7/7e/Kallio_Chipster_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/kallio-chipster-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 497: | Line 502: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[workflows] myExperiment: | <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] myExperiment: | ||
| − | Social Software for Sharing Workflows [http://www.open-bio.org/w/images/7/75/Bhagat_myExperiment_abstract.pdf Abstract]</span></p> | + | Social Software for Sharing Workflows [http://www.open-bio.org/w/images/7/75/Bhagat_myExperiment_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/bhagat-myexperiment-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 517: | Line 522: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[workflows] BioHDF: Open Binary | <p class=MsoNormal><span style='font-size:11.0pt'>[workflows] BioHDF: Open Binary | ||
| − | File Formats for Large Scale Data Management [http://www.open-bio.org/w/images/ | + | File Formats for Large Scale Data Management [http://www.open-bio.org/w/images/2/22/Smith_T_BioHDF_Abstract_revised.pdf Abstract] [http://www.slideshare.net/bosc_2008/smith-t-bio-hdf-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 538: | Line 543: | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[open source software] The | <p class=MsoNormal><span style='font-size:11.0pt'>[open source software] The | ||
Open HeliSphere<sup>TM</sup> Project: True Open Source from the Inventors of | Open HeliSphere<sup>TM</sup> Project: True Open Source from the Inventors of | ||
| − | True Single Molecule Sequencing [http://www.open-bio.org/w/images/f/fb/Kitzmiller_OpenHeliSphere_abstract.pdf Abstract]</span></p> | + | True Single Molecule Sequencing [http://www.open-bio.org/w/images/f/fb/Kitzmiller_OpenHeliSphere_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/kitzmiller-openhelisphereproject-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 558: | Line 563: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[open source software] | <p class=MsoNormal><span style='font-size:11.0pt'>[open source software] | ||
| − | Apollo: a Sequence Annotation Editor (with demonstration to follow) [http://www.open-bio.org/w/images/3/3a/Lee_Apollo_abstract.pdf Abstract]</span></p> | + | Apollo: a Sequence Annotation Editor (with demonstration to follow) [http://www.open-bio.org/w/images/3/3a/Lee_Apollo_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/lee-apollo-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 595: | Line 600: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioSQL | <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioSQL | ||
| − | Reloaded: 1.0 Release, PhyloDB Module, and Future Features [http://www.open-bio.org/w/images/3/3b/Lapp_BioSQL_abstract.pdf Abstract]</span></p> | + | Reloaded: 1.0 Release, PhyloDB Module, and Future Features [http://www.open-bio.org/w/images/3/3b/Lapp_BioSQL_abstract.pdf Abstract] [http://www.slideshare.net/hlapp/lapp-biosql-bosc2008 **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 616: | Line 621: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBRACE – | <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBRACE – | ||
| − | BioMart Developments and Future [http://www.open-bio.org/w/images/1/10/Haider_EMBRACE_abstract.pdf Abstract]</span></p> | + | BioMart Developments and Future [http://www.open-bio.org/w/images/1/10/Haider_EMBRACE_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/haider-embrace-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 637: | Line 642: | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] Biopython | <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] Biopython | ||
| − | Project Update [http://www.open-bio.org/w/images/e/e3/Antao_Biopython_abstract.pdf Abstract]</span></p> | + | Project Update 2008 [http://www.open-bio.org/w/images/e/e3/Antao_Biopython_abstract.pdf Abstract] [http://www.slideshare.net/bosc_2008/antao-biopython-bosc2008/ **SLIDES**] |
| + | </span></p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 657: | Line 663: | ||
mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
| − | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] GMOD</span></p> | + | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] [http://gmod.org/wiki/index.php/Community_Annotation_System GMOD]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 697: | Line 703: | ||
mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
| − | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] CMap: A Comparative Viewer</span></p> | + | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] CMap: A Comparative Viewer [http://www.slideshare.net/bosc_2008/faga-c-map-bosc2008/ **SLIDES**] |
| + | </span></p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
| Line 710: | Line 717: | ||
mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
| − | <p class=MsoNormal><span style='font-size:11.0pt'>John | + | <p class=MsoNormal><span style='font-size:11.0pt'>John Greene</span></p> |
<p class=MsoNormal><span style='font-size:11.0pt'></span></p> | <p class=MsoNormal><span style='font-size:11.0pt'></span></p> | ||
</td> | </td> | ||
| Line 717: | Line 724: | ||
mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
| − | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] ERIC: Enteropathogen Resource Information Center</span></p> | + | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] ERIC: Enteropathogen Resource Information Center [http://www.slideshare.net/bosc_2008/greene-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 737: | Line 744: | ||
mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
| − | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Off the Beaten Track--Buried Treasure and Hidden Jewels in BioPerl</span></p> | + | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Off the Beaten Track--Buried Treasure and Hidden Jewels in BioPerl [http://www.slideshare.net/bosc_2008/mackey-bio-perl-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 757: | Line 764: | ||
mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
| − | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Web Application Developments with Open Bio in Public health Informatics</span></p> | + | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Web Application Developments with Open Bio in Public health Informatics [http://www.slideshare.net/bosc_2008/gnaneshan-public-health-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 777: | Line 784: | ||
mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | mso-border-top-alt:solid windowtext .5pt;mso-border-left-alt:solid windowtext .5pt; | ||
mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'> | ||
| − | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] BioLib</span></p> | + | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] BioLib [http://www.slideshare.net/bosc_2008/prins-bio-lib-bosc2008/ **SLIDES**]</span></p> |
</td> | </td> | ||
</tr> | </tr> | ||
| Line 829: | Line 836: | ||
<p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs</span></p> | <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs</span></p> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[demo] Ergatis - Joshua Orvis</span></p> | <p class=MsoNormal><span style='font-size:11.0pt'>[demo] Ergatis - Joshua Orvis</span></p> | ||
| − | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Genographer - Travis Banks</span></p> | + | <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Genographer - Travis Banks [http://www.slideshare.net/bosc_2008/banks-genographer-bosc2008/ **SLIDES**] |
| + | </span></p> | ||
<p class=MsoNormal><span style='font-size:11.0pt'>[BOFs] See [[BOSC_2008/Birds-of-a-Feather]]</span></p> | <p class=MsoNormal><span style='font-size:11.0pt'>[BOFs] See [[BOSC_2008/Birds-of-a-Feather]]</span></p> | ||
</td> | </td> | ||
Latest revision as of 18:17, 7 September 2015
You may also download the entire BOSC program with the schedule and all abstracts as a PDF file (1971KB).
Return to BOSC2008 main page.
Schedule (Day 1)
|
Friday, July 18
|
||
|
9:00-9:15 |
Kam Dahlquist (Chair BOSC 2008) Jason Stajich (President OBF) |
[welcome] Open Bioinformatics Foundation Update **SLIDES** |
|
9:15-10:15 |
Julian Lombardi |
[keynote] Croquet: An Open Collaboration Architecture for Scientific Visualization and Simulation |
|
10:15-10:45 |
Coffee Break
|
|
|
10:45-11:10 |
Hervé Ménager |
[cyberinfrastructure] Mobyle: a New Full Web Bioinformatics Framework Abstract **SLIDES** |
|
11:10-11:35 |
Richard Smith |
[cyberinfrastructure] Intermine – Open Source Data Warehouse and Query Interface Abstract **SLIDES** |
|
11:35-12:00 |
Paul Gordon |
[cyberinfrastructure] Bridging Existing Bioinformatics Tools and Data into Semantic Web Services Abstract **SLIDES** |
|
12:00-12:25 |
Peter Rice |
[cyberinfrastructure] Soaplab2: More Reliable Sesame Door to Bioinformatics Programs Abstract |
|
12:30-1:30 |
Lunch
|
|
|
1:30-1:50 |
Barry Sanders & David Arcoleo |
[cyberinfrastructure] BeeSpace: An Interactive System for Functional Analysis Abstract**SLIDES** (PPT) |
|
1:50-2:10 |
Andrew Jenkinson
|
[cyberinfrastructure] BioDas Project Update Abstract **SLIDES** |
|
2:10-2:30 |
Kazuharu Arakawa |
[visualization] E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation Abstract **SLIDES** |
|
2:30-2:50 |
Peter Rice |
[bio*update] EMBOSS: European Molecular Biology Open Software Suite Abstract |
|
2:50-3:10 |
Michael Heuer
|
[bio*update] BioJava Project Update Abstract **SLIDES** |
|
3:10-3:18 |
Justin Wilson |
[lightning talk] Use the Make Utility for the Maintenance of Complex Bioinformatics Pipelines Abstract **SLIDES** |
|
3:20-3:28 |
Brian O'Connor |
[lightning talk] SolexaTools: An Open Source Sequence Analysis Framework Abstract **SLIDES** |
|
3:30-4:00 |
Coffee Break
|
|
|
4:00-5:30 |
Additional Lightning Talks/Demos/BOFs
|
|
Schedule (Day 2)
|
Saturday, July 19
|
||
|
9:00-9:05 |
Kam Dahlquist
|
Announcements |
|
9:05-9:30 |
Mark Wilkinson |
[workflows] Interoperability with BioMoby – Past, Present, and Future Abstract |
|
9:30-9:55 |
Joshua Orvis |
[workflows] Ergatis: A Web-based Bioinformatics Pipeline Management and Collaborative Development System Abstract |
|
9:55-10:15 |
Aleksi Kallio |
[workflows] Chipster – User Friendly DNA Microarray Analysis Software Abstract **SLIDES** |
|
10:15-10:45 |
Coffee Break
|
|
|
10:45-11:10 |
Jiten Bhagat |
[workflows] myExperiment: Social Software for Sharing Workflows Abstract **SLIDES** |
|
11:10-11:30 |
Todd Smith |
[workflows] BioHDF: Open Binary File Formats for Large Scale Data Management Abstract **SLIDES** |
|
11:30-11:50 |
Aaron Kitzmiller |
[open source software] The Open HeliSphereTM Project: True Open Source from the Inventors of True Single Molecule Sequencing Abstract **SLIDES** |
|
11:50-12:10 |
Ed Lee |
[open source software] Apollo: a Sequence Annotation Editor (with demonstration to follow) Abstract **SLIDES** |
|
12:30-1:30 |
Lunch
|
|
|
1:30-1:50 |
Hilmar Lapp |
[bio*update] BioSQL Reloaded: 1.0 Release, PhyloDB Module, and Future Features Abstract **SLIDES** |
|
1:50-2:10 |
Syed Haider
|
[bio*update] EMBRACE – BioMart Developments and Future Abstract **SLIDES** |
|
2:10-2:30 |
Tiago Antão
|
[bio*update] Biopython Project Update 2008 Abstract **SLIDES** |
|
2:30-2:38 |
Scott Cain
|
[lightning talk] GMOD |
|
2:38-2:46 |
Kannan Vijayan & Dustin Cram
|
[lightning talk] Fiesta |
|
2:46-2:54 |
Ben Faga
|
[lightning talk] CMap: A Comparative Viewer **SLIDES** |
|
2:54-3:02 |
John Greene
|
[lightning talk] ERIC: Enteropathogen Resource Information Center **SLIDES** |
|
3:02-3:10 |
Aaron J. Mackey
|
[lightning talk] Off the Beaten Track--Buried Treasure and Hidden Jewels in BioPerl **SLIDES** |
|
3:10-3:18 |
Saravanamuttu Gnaneshan
|
[lightning talk] Web Application Developments with Open Bio in Public health Informatics **SLIDES** |
|
3:18-3:26 |
Pjotr Prins (in absentia)
|
[lightning talk] BioLib **SLIDES** |
|
3:26-3:30 |
Gregg Helt
|
[lightning talk] Exploratory Analysis with DAS/2 and the Integrated Genome Browser (IGB) |
|
3:30-4:00 |
Coffee Break
|
|
|
4:00-5:30 |
Lightning Talks/Demos/BOFs [demo] Ergatis - Joshua Orvis [lightning talk] Genographer - Travis Banks **SLIDES** [BOFs] See BOSC_2008/Birds-of-a-Feather |
|
