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BOSC 2008 schedule

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Schedule (Day 1)

Friday, July18

9:00-9:15

Kam Dahlquist (Chair BOSC 2008)

Jason Stajich (President O|B|F)

[welcome] Open Bioinformatics Foundation Update

9:15-10:15

Julian Lombardi

[keynote] Croquet: An Open Collaboration Architecture for Scientific Visualization and Simulation

10:15-10:45

Coffee Break

10:45-11:05

Hervé Ménager

[cyberinfrastructure] Mobyle: a New Full Web Bioinformatics Framework

11:05-11:30

Richard Smith

[cyberinfrastructure] Intermine – Open Source Data Warehouse and Query Interface

11:30-12:05

Paul Gordon

[cyberinfrastructure] Bridging Existing Bioinformatics Tools and Data into Semantic Web Services

12:05-12:25

Peter Rice

[cyberinfrastructure] Soaplab2: More Reliable Sesame Door to Bioinformatics Programs

12:30-1:30

Lunch

1:30-1:50

Barry Sanders & David Arcoleo

[cyberinfrastructure] BeeSpace:  An Interactive System for Functional Analysis

1:50-2:10

Andrew Jenkinson

[cyberinfrastructure] BioDas Project Update

2:10-2:30

Kazuharu Arakawa

[visualization] E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation

2:30-2:50

Peter Rice

[bio*update] EMBOSS: European Molecular Biology Open Software Suite

2:50-3:10

Michael Heuer

[bio*update] BioJava Project Update

3:10-3:15

Justin Wilson

[lightning talk] Use the Make Utility for the Maintenance of Complex Bioinformatics Pipelines

3:15-3:30

Additional Lightning Talks/Demos/Birds of a Feather

See <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings

3:30-4:00

Coffee Break

4:00-5:30

Lightning Talks/Demos/BOFs


Schedule (Day 2)

<o:p> </o:p>

Saturday, July 19<o:p></o:p>

<o:p> </o:p>

9:00-9:05<o:p></o:p>

Kam Dahlquist<o:p></o:p>

<o:p> </o:p>

Announcements<o:p></o:p>

9:05-9:30<o:p></o:p>

Mark Wilkinson<o:p></o:p>

[workflows] Interoperability with BioMoby – Past, Present, and Future<o:p></o:p>

9:30-9:55<o:p></o:p>

Joshua Orvis<o:p></o:p>

[workflows] Ergatis: A Web-based Bioinformatics Pipeline Management and Collaborative Development System<o:p></o:p>

9:55-10:15<o:p></o:p>

Aleksi Kallio<o:p></o:p>

[workflows] Chipster – User Friendly DNA Microarray Analysis Software<o:p></o:p>

10:15-10:45<o:p></o:p>

Coffee Break<o:p></o:p>

<o:p> </o:p>

10:45-11:10<o:p></o:p>

Jiten Bhagat<o:p></o:p>

[workflows] myExperiment: Social Software for Sharing Workflows<o:p></o:p>

11:10-11:30<o:p></o:p>

Todd Smith<o:p></o:p>

[workflows] BioHDF: Open Binary File Formats for Large Scale Data Management<o:p></o:p>

11:30-11:50<o:p></o:p>

Aaron Kitzmiller<o:p></o:p>

[open source software] The Open HeliSphereTM Project: True Open Source from the Inventors of True Single Molecule Sequencing<o:p></o:p>

11:50-12:10<o:p></o:p>

Ed Lee<o:p></o:p>

[open source software] Apollo: a Sequence Annotation Editor (with demonstration to follow)<o:p></o:p>

12:30-1:30<o:p></o:p>

Lunch<o:p></o:p>

<o:p> </o:p>

1:30-1:50<o:p></o:p>

Hilmar Lapp<o:p></o:p>

[bio*update] BioSQL Reloaded: 1.0 Release, PhyloDB Module, and Future Features<o:p></o:p>

1:50-2:10<o:p></o:p>

Syed Haider<o:p></o:p>

<o:p> </o:p>

[bio*update] EMBRACE – BioMart Developments and Future<o:p></o:p>

2:10-2:30<o:p></o:p>

Tiago Antão <o:p></o:p>

<o:p> </o:p>

[bio*update] Biopython Project Update<o:p></o:p>

2:30-3:30<o:p></o:p>

Lightning Talks/Demos/BOFs<o:p></o:p>

See <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings<o:p></o:p>

3:30-4:00<o:p></o:p>

Coffee Break<o:p></o:p>

<o:p> </o:p>

4:00-5:30<o:p></o:p>

Lightning Talks/Demos/BOFs<o:p></o:p>

<o:p> </o:p>
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