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Difference between revisions of "BOSC 2011 Detailed Schedule"

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(Day 1: Friday, July 15 (Austria Center Vienna, Room TBA))
(Day 1: Friday, July 15 (Austria Center Vienna, Room TBA))
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| 2:50-3:10
 
| 2:50-3:10
| Applying Visual Analytics to Extend the Genome Browser from Visualization Tool to Analysis Tool Jeremy Goecks
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| [Visualization] Applying Visual Analytics to Extend the Genome Browser from Visualization Tool to Analysis Tool  
|
+
| Jeremy Goecks
 
|-
 
|-
 
| 3:10-3:20
 
| 3:10-3:20
| WebApollo: A web-based sequence annotation editor for community annotation
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| [Visualization] WebApollo: A web-based sequence annotation editor for community annotation
 
| Nomi Harris
 
| Nomi Harris
 
|-
 
|-
 
| 3:20-3:30
 
| 3:20-3:30
| The isobar R package: Analysis of quantitative proteomics data
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| [Visualization] The isobar R package: Analysis of quantitative proteomics data
 
| Florian Breitwieser
 
| Florian Breitwieser
 
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|
 
|-
 
|-
| 4:00-5:30
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| 4:00-4:20
| Session: Next Generation Sequencing
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| [Next-generation Sequencing] Stacks: building and genotyping loci de novo from short-read sequences
 +
| Julian Catchen
 +
|-
 +
| 4:20-4:40
 +
| [Next-generation Sequencing] Large scale NGS pipelines using the MOLGENIS platform: processing the Genome of the Netherlands Morris Swertz
 
|
 
|
 +
|-
 +
| 4:40-4:50
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| [Next-generation Sequencing] Bio-NGS: BioRuby plugin to conduct programmable workflows for Next Generation Sequencing data
 +
| Raoul Bonnal
 +
|-
 +
| 4:50-5:00
 +
| [Next-generation Sequencing] Goby framework: native support in GSNAP, BWA and IGV 2.0
 +
| Fabien Campagne
 +
|-
 +
| 5:00-5:10
 +
| [Parallel] A Scalable Multicore Implementation of the TEIRESIAS Algorithm
 +
| Frank Drews
 +
|-
 +
| 5:10-5:20
 +
| [Parallel] Biomanycores, open-source parallel code for many-core bioinformatics
 +
| Mathieu Giraud
 +
|-
 +
| 5:20-5:30
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| [Next-generation Sequencing] GemSIM: General, Error-Model Based Simulator of next-generation sequencing
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| Kerensa McElroy
 
|-
 
|-
 
| 5:30-6:30
 
| 5:30-6:30

Revision as of 05:10, 17 June 2011

NOTE: Schedule is preliminary--subject to change.

Day 1: Friday, July 15 (Austria Center Vienna, Room TBA)

Time Session Speaker or Moderator
7:30-9:00 Pick up badges for BOSC 2011, Austria Center Vienna

(Early arrival is recommended as there are usually long lines)

Registration
9:00-9:15 Introduction and welcome Nomi Harris (Co-Chair, BOSC)
9:15-10:15 [Keynote] The role of openness in knowledge-based systems for biomedicine Lawrence Hunter (University of Colorado)
10:15-10:45 Coffee Break
10:45-11:05 [Genome content management] Unipro UGENE: an open source toolkit for complex genome analysis Konstantin Okonechnikov
11:05-11:25 [Genome content management] Exploring the genome with Dalliance Thomas Down
11:25-11:45 [Genome content management] InterMine - Using RESTful Webservices for Interoperability Alex Kalderimis
11:45-11:55 [Genome content management] easyDAS: Automatic creation of DAS servers Bernat Gel
11:55-12:05 [Genome content management] Enacting Taverna Workflows through Galaxy Marco Roos
12:05-12:15 [Genome content management] "Mobyle 1.0: new features, new types of services" Hervé Ménager
12:15-12:25 [Genome content management] "BioMart 0.8 offers new tools, more interfaces, and increased flexibility through plug-ins" Junjun Zhang
12:25-12:32 [Genome content management] Running Workflows Through Taverna Server [lightning] Donal Fellows
12:30-2:00 Lunch
1:30-2:30 Poster Session I
2:30-2:50 [Visualization] Cytoscape 3.0: Architecture for Extension Michael Smoot
2:50-3:10 [Visualization] Applying Visual Analytics to Extend the Genome Browser from Visualization Tool to Analysis Tool Jeremy Goecks
3:10-3:20 [Visualization] WebApollo: A web-based sequence annotation editor for community annotation Nomi Harris
3:20-3:30 [Visualization] The isobar R package: Analysis of quantitative proteomics data Florian Breitwieser
3:30-4:00 Coffee Break
4:00-4:20 [Next-generation Sequencing] Stacks: building and genotyping loci de novo from short-read sequences Julian Catchen
4:20-4:40 [Next-generation Sequencing] Large scale NGS pipelines using the MOLGENIS platform: processing the Genome of the Netherlands Morris Swertz
4:40-4:50 [Next-generation Sequencing] Bio-NGS: BioRuby plugin to conduct programmable workflows for Next Generation Sequencing data Raoul Bonnal
4:50-5:00 [Next-generation Sequencing] Goby framework: native support in GSNAP, BWA and IGV 2.0 Fabien Campagne
5:00-5:10 [Parallel] A Scalable Multicore Implementation of the TEIRESIAS Algorithm Frank Drews
5:10-5:20 [Parallel] Biomanycores, open-source parallel code for many-core bioinformatics Mathieu Giraud
5:20-5:30 [Next-generation Sequencing] GemSIM: General, Error-Model Based Simulator of next-generation sequencing Kerensa McElroy
5:30-6:30 Poster Session II
5:30-6:30 BOFs
7:00 Pay-your-own-way optional dinner at a nearby restaurant

Day 2: Saturday, July 16 (Austria Center Vienna, Room TBA)

Time Session Speaker or Moderator
8:45-8:50 Announcements
8:50-9:50 [Keynote] Into the Wonderful Matt Wood (Amazon)
9:50-10:15 [Cloud] Securing and sharing bioinformatics in the cloud Richard Holland (Eagle Genomics)          
10:15-10:45 Coffee Break
10:45-12:30 Session: Cloud Computing and Parallel Processing
12:30-2:00 Lunch
1:00-2:00 Poster Session III
2:00-3:30 Session: Project Updates, Various Open Source bioinformatics projects        
3:30-4:00 Coffee Break
4:00-4:30 Session: Project Updates, Various Open Source bioinformatics projects        
4:30-5:20 Panel: Meeting the challenges of inter-institutional collaboration Panelists: Richard Holland (Eagle Genomics),

Hilmar Lapp (National Evolutionary Synthesis Center),

Jean Peccoud (Virginia Bioinformatics Institute),

Peter Rice (European Bioinformatics Institute)

5:20-5:30 Presentation of awards
5:30-6:30 BOFs


NOTE: Schedule is preliminary--subject to change.

Return to BOSC 2011 main page