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BOSC 2011 Detailed Schedule

From Open Bioinformatics Foundation
Revision as of 05:06, 17 June 2011 by Nomi (talk) (Day 1: Friday, July 15 (Austria Center Vienna, Room TBA))
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NOTE: Schedule is preliminary--subject to change.

Day 1: Friday, July 15 (Austria Center Vienna, Room TBA)

Time Session Speaker or Moderator
7:30-9:00 Pick up badges for BOSC 2011, Austria Center Vienna

(Early arrival is recommended as there are usually long lines)

Registration
9:00-9:15 Introduction and welcome Nomi Harris (Co-Chair, BOSC)
9:15-10:15 [Keynote] The role of openness in knowledge-based systems for biomedicine Lawrence Hunter (University of Colorado)
10:15-10:45 Coffee Break
10:45-11:05 [Genome content management] Unipro UGENE: an open source toolkit for complex genome analysis Konstantin Okonechnikov
11:05-11:25 [Genome content management] Exploring the genome with Dalliance Thomas Down
11:25-11:45 [Genome content management] InterMine - Using RESTful Webservices for Interoperability Alex Kalderimis
11:45-11:55 [Genome content management] easyDAS: Automatic creation of DAS servers Bernat Gel
11:55-12:05 [Genome content management] Enacting Taverna Workflows through Galaxy Marco Roos
12:05-12:15 [Genome content management] "Mobyle 1.0: new features, new types of services" Hervé Ménager
12:15-12:25 [Genome content management] "BioMart 0.8 offers new tools, more interfaces, and increased flexibility through plug-ins" Junjun Zhang
12:25-12:32 [Genome content management] Running Workflows Through Taverna Server [lightning] Donal Fellows
12:30-2:00 Lunch
1:30-2:30 Poster Session I
2:30-2:50 [Visualization] Cytoscape 3.0: Architecture for Extension Michael Smoot
2:50-3:10 Applying Visual Analytics to Extend the Genome Browser from Visualization Tool to Analysis Tool Jeremy Goecks
3:10-3:20 WebApollo: A web-based sequence annotation editor for community annotation Nomi Harris
3:20-3:30 The isobar R package: Analysis of quantitative proteomics data Florian Breitwieser
3:30-4:00 Coffee Break
4:00-5:30 Session: Next Generation Sequencing
5:30-6:30 Poster Session II
5:30-6:30 BOFs
7:00 Pay-your-own-way optional dinner at a nearby restaurant

Day 2: Saturday, July 16 (Austria Center Vienna, Room TBA)

Time Session Speaker or Moderator
8:45-8:50 Announcements
8:50-9:50 [Keynote] Into the Wonderful Matt Wood (Amazon)
9:50-10:15 [Cloud] Securing and sharing bioinformatics in the cloud Richard Holland (Eagle Genomics)          
10:15-10:45 Coffee Break
10:45-12:30 Session: Cloud Computing and Parallel Processing
12:30-2:00 Lunch
1:00-2:00 Poster Session III
2:00-3:30 Session: Project Updates, Various Open Source bioinformatics projects        
3:30-4:00 Coffee Break
4:00-4:30 Session: Project Updates, Various Open Source bioinformatics projects        
4:30-5:20 Panel: Meeting the challenges of inter-institutional collaboration Panelists: Richard Holland (Eagle Genomics),

Hilmar Lapp (National Evolutionary Synthesis Center),

Jean Peccoud (Virginia Bioinformatics Institute),

Peter Rice (European Bioinformatics Institute)

5:20-5:30 Presentation of awards
5:30-6:30 BOFs


NOTE: Schedule is preliminary--subject to change.

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