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Difference between revisions of "BOSC 2012 Schedule"

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(Day 1: Friday, July 13)
(Day 1: Friday, July 13)
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15
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| [Genome-scale] Using HDF5 to Work With Large Quantities of Biological Data
 
| [Genome-scale] Using HDF5 to Work With Large Quantities of Biological Data
 
| Dana Robinson
 
| Dana Robinson
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| 4:00-5:30
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| 4:00-5:20
| Session:  
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| Session: Linked Data and Translational Knowledge Discovery
| Chair:  
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| Chair: Jan Aerts
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|| 25
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| [Linked / Translational] The open source ISA metadata tracking framework: from data curation and management at the source, to the linked data universe
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| Philippe Rocca-Serra
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| 25
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| [Linked / Translational] Automated infrastructure for custom variant comparison and analysis
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| Brad Chapman
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| 15
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| [Linked / Translational] KUPKB: Sharing, Connecting and Exposing Kidney and Urinary Knowledge using RDF and OWL
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| Julie Klein
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| 15
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| [Linked / Translational] eagle-i: development and expansion of a scientific resource discovery network
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| Sophia Cheng
 
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|  
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| 5:20-5:30
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| Introduction to the Open Bioinformatics Foundation (O|B|F)
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| Hilmar Lapp (President, O|B|F)
 
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| 5:30-6:30
 
| 5:30-6:30
| '''Poster Session II''' (Foyer A)
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| '''Poster Session II''' (Room TBA)
 
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Revision as of 21:17, 24 May 2012

Day 1: Friday, July 13

Time Topic Speaker or Moderator
7:30-9:00 Pick up badges for BOSC 2012

(Early arrival is recommended as there are usually long lines)

Registration
9:00-9:15 Introduction and welcome Nomi Harris (Chair, BOSC 2012)
9:15-10:15 [Keynote] Science Wants to Be Open - If Only We Could Get Out of Its Way Jonathan Eisen (University of California, Davis)
10:15-10:45 Coffee Break
10:45-12:30 Session: Cloud and Parallel Computing Chair:
25 [Cloud] Cloudgene - an execution platform for MapReduce programs in public and private clouds Sebastian Schoenherr
25 [Cloud] Data reduction and division approaches for assembling short-read data in the cloud C. Titus Brown
25 [Cloud] MGTAXA - a toolkit and a Web server for predicting taxonomy of the metagenomic sequences with Galaxy front-end and parallel computational back-end Andrey Tovchigrechko
15 [Cloud] Workflows on the Cloud - Scaling for National Service Shoaib Sufi
15 [Cloud] How to use BioJava to calculate one billion protein structure alignments at the RCSB PDB website Andreas Prlic
12:30-1:30 Lunch
12:30-2:00 Poster Session I (Room TBA)
2:00-3:30 Session: Genome-scale Data Management Chair:
15 [Genome-scale] Using HDF5 to Work With Large Quantities of Biological Data Dana Robinson
15 [Genome-scale] Large scale data management in Chipster 2 workflow environment Aleksi Kallio
15 [Genome-scale] JBrowse 2012 Ian Holmes
15 [Genome-scale] Khmer: A probabilistic approach for efficient counting of k-mers Qingpeng Zhang
15 [Genome-scale] AmiGO 2: a document-oriented approach to ontology software and escaping the heartache of an SQL backend Seth Carbon
15 [Genome-scale] Discovery of motif-based regulatory signatures in whole genome methylation experiments Jens Lichtenberg
3:30-4:00 Coffee Break
4:00-5:20 Session: Linked Data and Translational Knowledge Discovery Chair: Jan Aerts
25 [Linked / Translational] The open source ISA metadata tracking framework: from data curation and management at the source, to the linked data universe Philippe Rocca-Serra
25 [Linked / Translational] Automated infrastructure for custom variant comparison and analysis Brad Chapman
15 [Linked / Translational] KUPKB: Sharing, Connecting and Exposing Kidney and Urinary Knowledge using RDF and OWL Julie Klein
15 [Linked / Translational] eagle-i: development and expansion of a scientific resource discovery network Sophia Cheng
5:20-5:30 B|F) B|F)
5:30-6:30 Poster Session II (Room TBA)
5:30-6:30 BOFs
7:00 Pay-your-own-way optional dinner

Day 2: Saturday, July 14 (Room TBA)

Time Topic Speaker or Moderator
8:45-8:50 Announcements
8:50-9:50 [Keynote] Title TBA Carole Goble (University of Manchester)
10:15-10:45 Coffee Break
10:45-12:30 Session: Chair:
12:30-2:00 Lunch
1:00-2:00 Poster Session III (Foyer A)
2:00-3:30 Session: Chair:
3:30-4:00 Coffee Break
4:00-4:30 Session: Misc. Open Source Projects Chair:
4:30-5:20 Panel: Moderator: Brad Chapman

Panelists: Hilmar Lapp (National Evolutionary Synthesis Center),

5:20-5:30 Presentation of awards Nomi Harris
5:30-6:30 BOFs

Return to BOSC 2012 main page