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Difference between revisions of "BOSC 2008 schedule"

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(BOSC 2008 Schedule)
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   <p class=MsoNormal><span style='font-size:11.0pt'>11:05-11:30<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>11:05-11:30</span></p>
 
   </td>
 
   </td>
 
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   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>Richard Smith<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Richard Smith</span></p>
 
   </td>
 
   </td>
 
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   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
   Intermine – Open Source Data Warehouse and Query Interface<o:p></o:p></span></p>
+
   Intermine – Open Source Data Warehouse and Query Interface</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>11:30-12:05<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>11:30-12:05</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>Paul Gordon<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Paul Gordon</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] Bridging
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure] Bridging
   Existing Bioinformatics Tools and Data into Semantic Web Services<o:p></o:p></span></p>
+
   Existing Bioinformatics Tools and Data into Semantic Web Services</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>12:05-12:25<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>12:05-12:25</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>Peter Rice<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Peter Rice</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
   Soaplab2: More Reliable Sesame Door to Bioinformatics Programs<o:p></o:p></span></p>
+
   Soaplab2: More Reliable Sesame Door to Bioinformatics Programs</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'>12:30-1:30<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>12:30-1:30</span></b></p>
 
   </td>
 
   </td>
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
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   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'>Lunch<o:p></o:p></span></b></p>
+
   style='font-size:11.0pt'>Lunch</span></b></p>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
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   style='font-size:11.0pt'></span></b></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>1:30-1:50<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>1:30-1:50</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>Barry Sanders &amp; David Arcoleo<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Barry Sanders &amp; David Arcoleo</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
 
   BeeSpace:<span style='mso-spacerun:yes'>  </span>An Interactive System for
 
   BeeSpace:<span style='mso-spacerun:yes'>  </span>An Interactive System for
   Functional Analysis<o:p></o:p></span></p>
+
   Functional Analysis</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>1:50-2:10<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>1:50-2:10</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>Andrew Jenkinson<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Andrew Jenkinson</span></p>
   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 
   </td>
 
   </td>
 
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   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[cyberinfrastructure]
   BioDas Project Update<o:p></o:p></span></p>
+
   BioDas Project Update</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>2:10-2:30<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>2:10-2:30</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
   <p class=MsoNormal><span style='font-size:11.0pt'>Kazuharu Arakawa<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Kazuharu Arakawa</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[visualization] E-Cell 3D: 3-Dimensional
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[visualization] E-Cell 3D: 3-Dimensional
   Visualization of Dynamic Cell Simulation<o:p></o:p></span></p>
+
   Visualization of Dynamic Cell Simulation</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>2:30-2:50<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>2:30-2:50</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
   <p class=MsoNormal><span style='font-size:11.0pt'>Peter Rice<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Peter Rice</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBOSS:
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] EMBOSS:
   European Molecular Biology Open Software Suite<o:p></o:p></span></p>
+
   European Molecular Biology Open Software Suite</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>2:50-3:10<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>2:50-3:10</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
   <p class=MsoNormal><span style='font-size:11.0pt'>Michael Heuer<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Michael Heuer</span></p>
   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'></span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioJava
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[bio*update] BioJava
   Project Update<o:p></o:p></span></p>
+
   Project Update</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>3:10-3:15<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>3:10-3:15</span></p>
 
   </td>
 
   </td>
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
 
   <td width=136 valign=top style='width:102.0pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
   <p class=MsoNormal><span style='font-size:11.0pt'>Justin Wilson<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>Justin Wilson</span></p>
 
   </td>
 
   </td>
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
 
   <td width=407 valign=top style='width:305.4pt;border-top:none;border-left:
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   mso-border-alt:solid windowtext .5pt;padding:0in 5.4pt 0in 5.4pt'>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Use the
 
   <p class=MsoNormal><span style='font-size:11.0pt'>[lightning talk] Use the
   Make Utility for the Maintenance of Complex Bioinformatics Pipelines<o:p></o:p></span></p>
+
   Make Utility for the Maintenance of Complex Bioinformatics Pipelines</span></p>
 
   </td>
 
   </td>
 
  </tr>
 
  </tr>
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   <p class=MsoNormal><span style='font-size:11.0pt'>3:15-3:30<o:p></o:p></span></p>
+
   <p class=MsoNormal><span style='font-size:11.0pt'>3:15-3:30</span></p>
 
   </td>
 
   </td>
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
 
   <td width=543 colspan=2 valign=top style='width:407.4pt;border-top:none;
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   <p class=MsoNormal><span style='font-size:11.0pt'>Additional Lightning
 
   <p class=MsoNormal><span style='font-size:11.0pt'>Additional Lightning
   Talks/Demos/Birds of a Feather<o:p></o:p></span></p>
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   Talks/Demos/Birds of a Feather</span></p>
 
   <p class=MsoNormal><span style='font-size:11.0pt'>See
 
   <p class=MsoNormal><span style='font-size:11.0pt'>See
   &lt;http://www.open-bio.org/wiki/BOSC_2008_schedule&gt; for updated listings<o:p></o:p></span></p>
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   &lt;http://www.open-bio.org/wiki/BOSC_2008_schedule&gt; for updated listings</span></p>
 
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   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'>3:30-4:00<o:p></o:p></span></b></p>
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   style='font-size:11.0pt'>3:30-4:00</span></b></p>
 
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   </td>
 
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   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'>Coffee Break<o:p></o:p></span></b></p>
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   style='font-size:11.0pt'>Coffee Break</span></b></p>
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
 
   <p class=MsoNormal><b style='mso-bidi-font-weight:normal'><span
   style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></b></p>
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   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs<o:p></o:p></span></p>
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   <p class=MsoNormal><span style='font-size:11.0pt'>Lightning Talks/Demos/BOFs</span></p>
   <p class=MsoNormal><span style='font-size:11.0pt'><o:p>&nbsp;</o:p></span></p>
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style='mso-bidi-font-weight:normal'><span style='font-size:16.0pt;font-family:
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Revision as of 21:17, 9 June 2008

Schedule (Day 1)

Friday, July18

9:00-9:15

Kam Dahlquist (Chair BOSC 2008)

Jason Stajich (President O|B|F)

[welcome] Open Bioinformatics Foundation Update

9:15-10:15

Julian Lombardi

[keynote] Croquet: An Open Collaboration Architecture for Scientific Visualization and Simulation

10:15-10:45

Coffee Break

10:45-11:05

Hervé Ménager

[cyberinfrastructure] Mobyle: a New Full Web Bioinformatics Framework

11:05-11:30

Richard Smith

[cyberinfrastructure] Intermine – Open Source Data Warehouse and Query Interface

11:30-12:05

Paul Gordon

[cyberinfrastructure] Bridging Existing Bioinformatics Tools and Data into Semantic Web Services

12:05-12:25

Peter Rice

[cyberinfrastructure] Soaplab2: More Reliable Sesame Door to Bioinformatics Programs

12:30-1:30

Lunch

1:30-1:50

Barry Sanders & David Arcoleo

[cyberinfrastructure] BeeSpace:  An Interactive System for Functional Analysis

1:50-2:10

Andrew Jenkinson

[cyberinfrastructure] BioDas Project Update

2:10-2:30

Kazuharu Arakawa

[visualization] E-Cell 3D: 3-Dimensional Visualization of Dynamic Cell Simulation

2:30-2:50

Peter Rice

[bio*update] EMBOSS: European Molecular Biology Open Software Suite

2:50-3:10

Michael Heuer

[bio*update] BioJava Project Update

3:10-3:15

Justin Wilson

[lightning talk] Use the Make Utility for the Maintenance of Complex Bioinformatics Pipelines

3:15-3:30

Additional Lightning Talks/Demos/Birds of a Feather

See <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings

3:30-4:00

Coffee Break

4:00-5:30

Lightning Talks/Demos/BOFs


Schedule (Day 2)

<o:p> </o:p>

Saturday, July 19<o:p></o:p>

<o:p> </o:p>

9:00-9:05<o:p></o:p>

Kam Dahlquist<o:p></o:p>

<o:p> </o:p>

Announcements<o:p></o:p>

9:05-9:30<o:p></o:p>

Mark Wilkinson<o:p></o:p>

[workflows] Interoperability with BioMoby – Past, Present, and Future<o:p></o:p>

9:30-9:55<o:p></o:p>

Joshua Orvis<o:p></o:p>

[workflows] Ergatis: A Web-based Bioinformatics Pipeline Management and Collaborative Development System<o:p></o:p>

9:55-10:15<o:p></o:p>

Aleksi Kallio<o:p></o:p>

[workflows] Chipster – User Friendly DNA Microarray Analysis Software<o:p></o:p>

10:15-10:45<o:p></o:p>

Coffee Break<o:p></o:p>

<o:p> </o:p>

10:45-11:10<o:p></o:p>

Jiten Bhagat<o:p></o:p>

[workflows] myExperiment: Social Software for Sharing Workflows<o:p></o:p>

11:10-11:30<o:p></o:p>

Todd Smith<o:p></o:p>

[workflows] BioHDF: Open Binary File Formats for Large Scale Data Management<o:p></o:p>

11:30-11:50<o:p></o:p>

Aaron Kitzmiller<o:p></o:p>

[open source software] The Open HeliSphereTM Project: True Open Source from the Inventors of True Single Molecule Sequencing<o:p></o:p>

11:50-12:10<o:p></o:p>

Ed Lee<o:p></o:p>

[open source software] Apollo: a Sequence Annotation Editor (with demonstration to follow)<o:p></o:p>

12:30-1:30<o:p></o:p>

Lunch<o:p></o:p>

<o:p> </o:p>

1:30-1:50<o:p></o:p>

Hilmar Lapp<o:p></o:p>

[bio*update] BioSQL Reloaded: 1.0 Release, PhyloDB Module, and Future Features<o:p></o:p>

1:50-2:10<o:p></o:p>

Syed Haider<o:p></o:p>

<o:p> </o:p>

[bio*update] EMBRACE – BioMart Developments and Future<o:p></o:p>

2:10-2:30<o:p></o:p>

Tiago Antão <o:p></o:p>

<o:p> </o:p>

[bio*update] Biopython Project Update<o:p></o:p>

2:30-3:30<o:p></o:p>

Lightning Talks/Demos/BOFs<o:p></o:p>

See <http://www.open-bio.org/wiki/BOSC_2008_schedule> for updated listings<o:p></o:p>

3:30-4:00<o:p></o:p>

Coffee Break<o:p></o:p>

<o:p> </o:p>

4:00-5:30<o:p></o:p>

Lightning Talks/Demos/BOFs<o:p></o:p>

<o:p> </o:p>