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• Main Page
  ...a growing community of people committed to developing reusable open-source software for advancing biological research. ...to promoting the practice and philosophy of [[wp:open source|Open Source]] software development and [[wp:Open science|Open Science]] within the biological rese
  5 KB (664 words) - 15:52, 20 December 2017
• BOSC 2006
  The 7th annual Bioinformatics Open Source Conference ([[BOSC]] 2006) will take place in [[wp:Fortaleza, B ...p://ca.expasy.org/people/amos.html Amos Bairoch] of the Swiss Institute of Bioinformatics
  7 KB (1,036 words) - 20:22, 21 November 2015
• Newsletter:2002 Summer
  ==Summer 2002 Open Bioinformatics Foundation newsletter== ==Open Bioinformatics Foundation Report==
  27 KB (4,151 words) - 17:58, 11 April 2007
• Newsletter:2001 Winter
  (taken from [http://open-bio.org/pipermail/open-bioinformatics-foundation/2001-October/000001.html email posting] (O|B|F) Open Bioinformatics Foundation October 2001 Newsletter
  18 KB (2,664 words) - 17:58, 11 April 2007
• Projects
  ...home page], [http://hackage.haskell.org/packages/archive/pkg-list.html#cat:bioinformatics releases] * [http://biocaml.org Biocaml] - bioinformatics library in the functional programming language OCaml
  2 KB (327 words) - 16:54, 9 January 2019
• Newsletter:2006 Winter
  ==Winter 2006 Open Bioinformatics Foundation Newsletter== ==Open Bioinformatics Foundation Report==
  22 KB (3,363 words) - 16:26, 8 February 2006
• EMBOSS
  European Molecular Biology Open Software Suite or EMBOSS. The EMBOSS project is based at the [http://www.ebi.ac.uk/ European Bioinformatics Institute] in Hinxton, near Cambridge in the United Kingdom. EMBOSS started
  352 bytes (52 words) - 16:33, 15 February 2013
• Membership
  ...professionals, scientists, students, and others active in the Open Source Software arena in the life sciences to [https://docs.google.com/forms/d/e/1FAIpQLSfl
  2 KB (347 words) - 13:18, 26 October 2018
• BOSC 2006/Abstracts
  ...be used to extend PostgreSQL, the popular open-source database system, for bioinformatics and computational biology. Each of the BioPostgres modules is intended to b ...ware package, ZMap, that is a visualisation tool for genomic features. The software is a multi-threaded application written in C, utilising the gnome toolkit (
  31 KB (4,702 words) - 17:56, 6 June 2008
• BOSC 2006/survey
  7. I use Open Source Bioinformatics Software:<br> 8. I write Open Source Bioinformatics Software:<br>
  2 KB (365 words) - 07:32, 5 August 2006
• BOSC/Prepare for Vienna
  ...ct and share ideas about software development, and practical techniques in bioinformatics; ...search Community of important developments occuring within the Open Source Bioinformatics Developer community.
  21 KB (3,390 words) - 10:05, 1 March 2007
• BOSC 2007
  The 8th annual Bioinformatics Open Source Conference ([[BOSC]] 2007) will take place in [[wp:Vienna, Aust ...ons will be set up to allow presentations on new Software Design Patterns, Software Engineering ideas, and more traditional BOSC talks (see below for details a
  8 KB (1,278 words) - 20:22, 21 November 2015
• BOSC 2007 Schedule
  ...Carole Goble [http://www.slideshare.net/dullhunk/the-seven-deadly-sins-of-bioinformatics **SLIDES**] ...007_Abstracts#.5BOS_Software.5D_The_ONDEX_Data_Integration_Framework | [OS Software] Jan Taubert: The ONDEX Data Integration Framework]] [http://www.slideshare
  6 KB (690 words) - 16:20, 10 September 2013
• BOSC 2007 Abstracts
  ...de these tools in an integrated environment that is accessible not just to software developers, but to experimental biologists. We have developed a system -- G The current standard for genome browser software involves a user interface based on static web pages. These pages are create
  34 KB (5,069 words) - 17:57, 6 June 2008
• BOSC/liveCD
  =BOSC Software Distribution= ...ienna on the 19th July 2007. The focus is the possibility of an 'enriched' software distribution, curated to add extra value and built into a Debian based Live
  7 KB (1,047 words) - 10:08, 19 August 2008
• BOSC 2007/ISMB Attendees/OBF
  ==Main Mission of the Open Bioinformatics Foundation (OBF)== **Some of the best Bioinformatics Software in existence is Open Source:
  890 bytes (111 words) - 14:10, 7 September 2015
• BOSC/Survey
  7. I use Open Source Bioinformatics Software:<br> 8. I write Open Source Bioinformatics Software:<br>
  2 KB (362 words) - 16:36, 3 August 2007
• Minutes:2007 BOSC Meeting
  ** Public opinion forming on open source software? ...le to engage in discourse about how to advance the state of open source in bioinformatics
  3 KB (523 words) - 11:33, 1 October 2007
• BOSC 2008
  The 9th annual Bioinformatics Open Source Conference (BOSC 2008) will take place in [[wp:Toronto|Toronto, ...so have a series of update talks about the main Open Source Bioinformatics Software suites.
  11 KB (1,713 words) - 20:21, 21 November 2015
• BioRuby
  ...NA and protein sequence analysis, alignment, database parsing, and other [[Bioinformatics]] tools. Recently, tools for structural biology have been added. [[Category:Bioinformatics software]]
  487 bytes (62 words) - 14:30, 4 June 2008
• BOSC 2008 schedule
  Bioinformatics Foundation Update [http://www.slideshare.net/bosc_2008/introduction-bosc200 Mobyle: a New Full Web Bioinformatics Framework [http://www.open-bio.org/w/images/c/c7/Menager_Mobyle_abstract.pd
  51 KB (6,455 words) - 14:17, 7 September 2015
• BOSC 2009
  ...it group dedicated to promoting the practice and philosophy of Open Source software development within the biological research community. ...pers from other projects as short, informal, and hands-on tutorials in new software packages and emerging technologies. In short, BOSC is not just a conferenc
  15 KB (2,238 words) - 20:20, 21 November 2015
• Minutes:2008 ConfCall
  ...ssion statement to be broader about the support of open source software in bioinformatics, to better explain what the OBF stands for. ...ls to encourage authors to use open-source licenses, promoting open source software to granting agencies
  14 KB (2,124 words) - 12:30, 7 January 2009
• Google Summer of Code
  ...rricula, yet are highly desired in the increasingly global and distributed software, IT, and biotechnology industries. :* [http://hackage.haskell.org/packages/#cat:Bioinformatics Bioinformatics section on HackageDB]
  20 KB (2,993 words) - 06:39, 18 February 2016
• BOSC 2009 Schedule
  ...iomanycores, a repository of interoperable open-source code for many-cores bioinformatics]] [http://www.slideshare.net/bosc/varrebiomanycoresbosc2009 ***SLIDES***] ...g Talk] [[Media:Bosc2009_submission_28.pdf | The Nordic BioGrid project -- Bioinformatics for the grid]] [http://www.slideshare.net/bosc/hedlundbiogridbosc2009 ***SL
  10 KB (1,165 words) - 14:11, 7 September 2015
• BOSC 2010
  The 11th Annual Bioinformatics Open Source Conference (BOSC) 2010 will be held for two days in conjunction ...lement-12 Proceedings] have been published as of 21 December 2010 in ''BMC Bioinformatics''.
  20 KB (2,972 words) - 17:57, 26 September 2016
• Minutes:2009 BOSC Meeting
  * Shouldn't OBF take a more outspoken role in software development best practices, patterns, and standards? ** There are still many new people coming into Bioinformatics that come from a different background. They shouldn't have to learn by the
  4 KB (693 words) - 16:58, 14 December 2009
• Google Summer of Code 2010 Org Application
  Open Bioinformatics Foundation ...and organizes conferences and workshops to promote and support open-source bioinformatics.
  9 KB (1,391 words) - 17:27, 18 March 2010
• Google Summer of Code Application Evaluation
  ...et things done, but to train and recruit future bioinformatics open-source software contributors.
  5 KB (923 words) - 15:36, 12 April 2012
• BOSC 2010 Schedule
  ...issue=S12 Proceedings] have been published as of 21 December 2010 in ''BMC Bioinformatics''.''' ...ew of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics]] [http://www.slideshare.net/bosc2010/taylor-bosc2010 ***SLIDES***]
  12 KB (1,453 words) - 14:13, 7 September 2015
• BOSC 2016 Schedule
  |Open Bioinformatics Foundation (OBF) Update |GRNmap and GRNsight: open source software for dynamical systems modeling and visualization of medium-scale gene regul
  15 KB (2,064 words) - 00:02, 21 May 2017
• BOSC 2011
  The 12th Annual Bioinformatics Open Source Conference (BOSC 2011) was held immediately before the 19th Ann ...it group dedicated to promoting the practice and philosophy of Open Source software development within the biological research community.
  11 KB (1,650 words) - 14:14, 7 September 2015
• Codefest 2016
  ...come to attend. We will have a mix of experienced developers, newcomers to bioinformatics and everything in between. The goal of Codefest is to bring open source bioinformatics programmers together to have an enjoyable and productive two days. Practica
  10 KB (1,565 words) - 05:41, 21 April 2017
• Google Summer of Code 2011 Org Application
  Open Bioinformatics Foundation ...and organizes conferences and workshops to promote and support open-source bioinformatics.
  8 KB (1,317 words) - 13:34, 10 March 2011
• BOSC 2011/BOFs
  * [http://campagnelab.org/software/goby/ Goby Framework] and APIs. Organizer: Fabien Campagne. * Hands-on to prepare a Debian package for your software. Organizer: Steffen M&ouml;ller
  2 KB (318 words) - 08:56, 16 July 2011
• BOSC 2012
  The 13th Annual Bioinformatics Open Source Conference (BOSC 2012) was held July 13-14, 2012, in Long Beach ...it group dedicated to promoting the practice and philosophy of Open Source software development within the biological research community.
  12 KB (1,814 words) - 14:15, 7 September 2015
• Minutes:2011 ConfCall
  ...r industry. Possibly in conjunction with [http://www.spi-inc.org/ Debian's Software in the Public Interest] setup.</li> ...ommendations was to interface (or even merge) with the (also accepted) new Software Interoperability SIG (led by Galaxy and GenePattern PIs). If we do this, it
  17 KB (2,706 words) - 19:36, 16 November 2011
• EU Codefest 2012
  * RDF and semantic web for bioinformatics. * Bioinformatics pipelines definition, execution and distribution.
  7 KB (1,011 words) - 16:20, 30 July 2013
• BOSC 2012 Schedule
  ...hare.net/jandot/s-carbon AmiGO 2: a document-oriented approach to ontology software and escaping the heartache of an SQL backend] | Introduction to the [http://www.open-bio.org/wiki/Main_Page Open Bioinformatics Foundation]
  10 KB (1,131 words) - 16:17, 10 September 2013
• BOSC 2013
  |The 14th Annual Bioinformatics Open Source Conference (BOSC 2013) took place July 19-20, 2013, in Berlin, ...arris et al. (2014) The Bioinformatics Open Source Conference (BOSC) 2013. Bioinformatics (in press)]
  9 KB (1,262 words) - 12:47, 26 February 2016
• Minutes:2012 Nov ConfCall
  ...grative Genomics. In this role, he is involved in completely revamping the Bioinformatics resources on the UIUC campus. Chris has meanwhile moved into other language ...ibuting members, for which one has to be an active participant in the free software community. For becoming a contributing member, one has to provide a stateme
  11 KB (1,903 words) - 21:15, 27 January 2013
• Google Summer of Code 2012
  The Open Bioinformatics Foundation has been accepted as a mentoring organization for Google Summer My project was about parsing the GFF3 textual format used in bioinformatics, but at the same time increasing the speed and reducing the memory footprin
  8 KB (1,266 words) - 03:32, 12 February 2014
• BOSC Keynote Speakers
  the development of computational algorithms and software tools for Infernal software suites, as well as a coauthor of the Pfam database
  5 KB (786 words) - 14:40, 15 July 2013
• BOSC 2013 Schedule
  | [Open Science] Ten Simple Rules for the Open Development of Scientific Software (followed by discussion) ([http://www.open-bio.org/bosc2013/day1/BOSC2013_T | Session: Bioinformatics Open Source Project Updates
  12 KB (1,697 words) - 16:16, 10 September 2013
• BOSC 2014
  The 15th Annual Bioinformatics Open Source Conference (BOSC 2014) was held at the Hynes Convention Center Brad Chapman's [http://smallchangebio.wordpress.com/2014/07/11/notes-bioinformatics-open-source-conference-2014-day-1-afternoon-visualization-project-updates-a
  9 KB (1,283 words) - 12:50, 13 April 2017
• BOSC 2014 Keynote Speakers
  ...clusions, reviews, grants and so on. This offers immense opportunities for software developers to enable the enterprise. I will describe a vision for the digit ...mputational biology, bioinformatics, open source software development, and software engineering.
  4 KB (519 words) - 09:23, 26 April 2014
• Google Summer of Code 2014 Ideas
  ...programming languages used in [http://en.wikipedia.org/wiki/Bioinformatics bioinformatics]. In addition to working with each of the "Bio*" projects (listed below), t ...nals.org/content/early/2014/02/03/bioinformatics.btu072.short published in Bioinformatics]. It combines previous work on data visualization, computer vision, and mac
  41 KB (6,160 words) - 14:08, 12 March 2014
• BOSC 2014 Schedule
  | [[BOSC_2014_Keynote_Speakers|Keynote: A History of Bioinformatics (in the Year 2039)]] ([https://youtu.be/uwsjwMO-TEA video], [http://www.sli | [http://www.open-bio.org/wiki/Main_Page Open Bioinformatics Foundation (OBF) update] ([https://youtu.be/1oSTb8ZAxec video])
  15 KB (1,977 words) - 12:51, 18 April 2017
• EU-Codefest 2014
  This is a great opportunity for open source bioinformatics developers to meet and work collaboratively. We hope to have developers from all the OpenBio, bioinformatics and scientific programming projects. Everyone is welcome to
  5 KB (792 words) - 07:58, 16 September 2014
• Google Summer of Code 2014
  The Open Bioinformatics Foundation has been accepted as a mentoring organization for Google Summer ...programming languages used in [http://en.wikipedia.org/wiki/Bioinformatics bioinformatics]. In addition to working with each of the "Bio*" projects (listed below), t
  43 KB (6,405 words) - 07:56, 16 February 2015
• BOSC 2015
  ...om/informatics/bosc-community-discusses-ways-boost-diversity-participation-bioinformatics GenomeWeb]). ...Day 2 (afternoon)], [https://smallchangebio.wordpress.com/2015/07/11/notes-bioinformatics-open-source-conference-2015-day-2-morning-ewan-birney-open-science-and-repr
  13 KB (1,759 words) - 08:45, 18 April 2017
• Minutes:2014 Nov ConfCall
  Open Bioinformatics Foundation (OBF) Public Board Meeting, held Tuesday 18 November 2014, from ...ng to support Open Source projects (at least they have links to the Python Software Foundation).
  4 KB (583 words) - 09:28, 12 May 2015
• Codefest 2015
  The goal of Codefest is to bring open source bioinformatics programmers together to have an enjoyable and productive two days. Practica ...lU2XKONuUqY/edit Codefest 2014] and [http://bcb.io/2013/07/18/summary-from-bioinformatics-open-science-codefest-2013-tools-infrastructure-standards-and-visualization
  8 KB (1,169 words) - 10:50, 15 July 2015
• Google Summer of Code 2015 Ideas
  ...programming languages used in [http://en.wikipedia.org/wiki/Bioinformatics bioinformatics]. In addition to working with each of the "Bio*" projects (listed below), t ...uired by next generation sequence technologies and, in more general terms, bioinformatics applications easier for researchers. You can read more about Nextflow at th
  23 KB (3,331 words) - 12:53, 2 March 2015
• BOSC 2015 Keynote Speakers
  ...hrough active collaborations with computer scientists and participation in software development projects, her long-term research aims to address existing bottl Holly's keynote talk topic is "Bioinformatics: Still a scary world for biologists".
  5 KB (688 words) - 14:24, 13 May 2015
• BOSC 2015 Schedule
  |'''Keynote:''' '''Bioinformatics: Still a scary world for biologists''' ([http://figshare.com/articles/Bioin |Arvados: A Free Software Platform for Big Data Science ([http://f1000research.com/slides/4-364 slide
  17 KB (2,405 words) - 18:17, 11 July 2016
• Bio-packaging
  ...deployment for bioinformatics you can meet like-minded people on the Open Bioinformatics Foundation (OBF) On the mailing list we discuss issues around packaging and deploying software: anything that concerns dependencies, multiple version support and/or repro
  2 KB (358 words) - 11:55, 11 June 2015
• BOSC 2015 Panel
  == Open Source, Open Door: increasing diversity in the bioinformatics open source community == .../twitter.com/monimunozto @monimunozto]) is the lead biocurator at Berkeley Bioinformatics Open-Source Projects (BBOP). She is part of the development teams for Web A
  5 KB (661 words) - 15:19, 12 May 2016
• BOSC 2016
  * Harris NL, Cock PJA, Chapman B et al. The 2016 Bioinformatics Open Source Conference (BOSC) [version 1; referees: not peer reviewed]. F10 ...[http://gigasciencejournal.com/blog/open-bioinformatics-goes-disney/ Open bioinformatics in the house of the mouse] by Scott Edmunds
  10 KB (1,441 words) - 17:32, 28 July 2017
• BOSC 2016 Keynote Speakers
  ...fer Gardy is both a scientist and science communicator. She holds a PhD in Bioinformatics, and is an Assistant Professor of Population and Public Health at the Unive ...me of the dramatic changes in public health microbiology that genomics and bioinformatics has facilitated, and look at how future data sharing efforts in areas such
  5 KB (768 words) - 01:15, 17 March 2016
• BOSC 2017
  The 18th Annual Bioinformatics Open Source Conference (BOSC 2017) was held '''July 22-23, 2017 in Prague'' ...ies; approaches that promote open science and sharing of data, results and software; and ways to grow open source communities while promoting diversity within
  11 KB (1,556 words) - 21:51, 27 January 2018
• Codefest 2017
  ...come to attend. We will have a mix of experienced developers, newcomers to bioinformatics and everything in between. The goal of Codefest is to bring open source bioinformatics programmers together to have an enjoyable and productive two days. Practica
  13 KB (2,006 words) - 07:38, 22 July 2017
• Minutes:2016 Oct ConfCall
  ...er has evolved, and welcomes the role of the OBF in encouraging openess in bioinformatics and wishes to help with this. Interested in increasing the visiblity of the '''Nomi Harris''': (Continuing as Member at Large) Long career in Bioinformatics, and involved in the founding of BOSC in 2000 and has served on the committ
  7 KB (1,090 words) - 23:54, 15 November 2016
• BOSC 2016 Panel
  ...witter.com/monimunozto @monimunozto]) is the biocuration lead for Berkeley Bioinformatics Open-Source Projects (BBOP) at Lawrence Berkeley National Laboratory. She i ...for Cancer Research and at Michigan State University. With a background in bioinformatics and computer science, she builds tools that use the web to move science for
  5 KB (720 words) - 13:16, 27 May 2016
• BOSC 2017 Panel
  ...witter.com/monimunozto @monimunozto]) is the biocuration lead for Berkeley Bioinformatics Open-Source Projects (BBOP) at Lawrence Berkeley National Laboratory. She l ...of open genomic data in healthcare. A Professor of Microbial Genomics and Bioinformatics at the University of Birmingham, Dr. Loman explores the use of cutting-edge
  4 KB (542 words) - 12:57, 17 June 2017
• BOSC 2017 Schedule
  | 10:10-10:45 || Introduction to the Open Bioinformatics Foundation; OBF in the Google Summer of Code; Codefest 2017 Report |The Open Bioinformatics Foundation ([https://youtu.be/DeDRLIpuWJg video])
  31 KB (4,120 words) - 08:28, 22 August 2017
• BOSC 2018
  Oregon as part of [https://gccbosc2018.sched.com/ the GCCBOSC 2018 bioinformatics community conference] we've been exploring ways to reach those in the bioinformatics community who aren’t already part of the audience attracted
  8 KB (1,167 words) - 02:18, 9 March 2019
• Codefest Winter 2018
  ...unity members together before the [https://gccbosc2018.sched.com/ GCC/BOSC bioinformatics community conference in Portland in June]. It will be held at Harvard Medic ...come to attend. We will have a mix of experienced developers, newcomers to bioinformatics and everything in between.
  11 KB (1,707 words) - 17:02, 19 January 2018
• GCCBOSC Abstract Submission
  For 2018, the '''[[BOSC_2018|Bioinformatics Open Source Conference (BOSC 2018)]]''' and the '''Galaxy Community Confere ...ce tools for data science and visualization, and medical and translational bioinformatics. '''Work discussed in BOSC presentations must be open source''', with a rec
  6 KB (844 words) - 14:26, 31 January 2019